RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 CT45A3Q8NHU0 189 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 DDB2Q92466 427 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 P2RX4Q99571 388 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 TGIF2-C20orf24A0A0A6YYL0 155 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 CRYABP02511 175 aaKnown RBP12.74□□□□□ -0.37
UPF3B-202ENST00000345865 CD40P25942 277 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 RPS10P46783 165 aaKnown RBP12.74□□□□□ -0.37
UPF3B-202ENST00000345865 MEOX2P50222 304 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 PMS2P11Q13670 270 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 PRAMEF5Q5TYX0 476 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 WDR25Q64LD2 544 aaPredicted RBP12.74□□□□□ -0.37
UPF3B-202ENST00000345865 C1QL4Q86Z23 238 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 SDF2L1Q9HCN8 221 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 YLPM1P49750 1951 aaKnown RBP12.74□□□□□ -0.37
UPF3B-202ENST00000345865 NQO2P16083 231 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 TNFAIP6P98066 277 aaPredicted RBP12.74□□□□□ -0.37
UPF3B-202ENST00000345865 STUMQ69YW2 141 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 RNF7Q9UBF6 113 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 APC2O95996 2303 aa12.74□□□□□ -0.37
UPF3B-202ENST00000345865 CTXND1A0A1B0GTU2 59 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 RELBQ01201 579 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 TMEM170AQ8WVE7 144 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 RAB24Q969Q5 203 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 SNRNP40Q96DI7 357 aaKnown RBP12.73□□□□□ -0.37
UPF3B-202ENST00000345865 SDSLQ96GA7 329 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 GAFA1Q96PS6 74 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 GFOD1Q9NXC2 390 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 METTL1Q9UBP6 276 aaKnown RBP12.73□□□□□ -0.37
UPF3B-202ENST00000345865 KBTBD11-OT1A0A1B0GTJ5 212 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 RRHO14718 337 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 VDAC2P45880 294 aaPredicted RBP12.73□□□□□ -0.37
UPF3B-202ENST00000345865 GCSAMLQ5JQS6 135 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 FAM216BQ8N7L0 139 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 S1PR3Q99500 378 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 SSX3Q99909 188 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 ZNF251Q9BRH9 671 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 SIRT7Q9NRC8 400 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 IL19Q9UHD0 177 aa12.73□□□□□ -0.37
UPF3B-202ENST00000345865 SAA2-SAA4A0A096LPE2 208 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 CXorf65A6NEN9 183 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 RBFOX2O43251 390 aaKnown RBP eCLIP12.72□□□□□ -0.37
UPF3B-202ENST00000345865 MMP23AO75900 390 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 SAA2P0DJI9 122 aaPredicted RBP12.72□□□□□ -0.37
UPF3B-202ENST00000345865 SPCS3P61009 180 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 MEF2BQ02080 365 aaPredicted RBP12.72□□□□□ -0.37
UPF3B-202ENST00000345865 KRTCAP3Q53RY4 240 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 DOLPP1Q86YN1 238 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 OR4A16Q8NH70 328 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 CCL13Q99616 98 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 TMEM140Q9NV12 185 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 A0A0G2JNJ9 132 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 FAM90A9PA6NNJ1 464 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 B4DEV8 164 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 GYPAP02724 150 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 CD1BP29016 333 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 ABHD12Q8N2K0 398 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 Q9UFV3 132 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 WDR83OSQ9Y284 106 aa12.72□□□□□ -0.37
UPF3B-202ENST00000345865 PTPRZ1P23471 2315 aaPredicted RBP12.71□□□□□ -0.37
UPF3B-202ENST00000345865 PRSS46E5RG02 174 aa12.71□□□□□ -0.37
UPF3B-202ENST00000345865 GFRA3O60609 400 aa12.71□□□□□ -0.37
UPF3B-202ENST00000345865 IFNA1P01562 189 aa12.71□□□□□ -0.37
UPF3B-202ENST00000345865 MBP02144 154 aa12.71□□□□□ -0.37
UPF3B-202ENST00000345865 PNRC1Q12796 327 aaPredicted RBP12.71□□□□□ -0.37
UPF3B-202ENST00000345865 ZCCHC24Q8N2G6 241 aaKnown RBP12.71□□□□□ -0.37
UPF3B-202ENST00000345865 FAM216AQ8WUB2 273 aa12.71□□□□□ -0.37
UPF3B-202ENST00000345865 NCOR1P1Q9H4R4 102 aa12.71□□□□□ -0.37
UPF3B-202ENST00000345865 AP4M1O00189 453 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 IFNA10P01566 189 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 PDLIM3Q53GG5 364 aaPredicted RBP12.71□□□□□ -0.38
UPF3B-202ENST00000345865 ZNF709Q8N972 641 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 ZNF383Q8NA42 475 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 ZNF439Q8NDP4 499 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 ABHD17AQ96GS6 310 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 ACTR3CQ9C0K3 210 aaPredicted RBP12.71□□□□□ -0.38
UPF3B-202ENST00000345865 ZNRD1Q9P1U0 126 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 GAB2Q9UQC2 676 aa12.71□□□□□ -0.38
UPF3B-202ENST00000345865 TNCP24821 2201 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 ITGB1BP1O14713 200 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 TDGF1P3P51864 188 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 CCL8P80075 99 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 ZNF788Q6ZQV5 615 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 OR52E5Q8NH55 327 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 HEYLQ9NQ87 328 aaPredicted RBP12.7□□□□□ -0.38
UPF3B-202ENST00000345865 CYB5BO43169 146 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 SELENOVP59797 346 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 ERVK-16P61578 105 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 ZNF674Q2M3X9 581 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 NCMAPQ5T1S8 102 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 SLC16A13Q7RTY0 426 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 RPUSD4Q96CM3 377 aaKnown RBP12.7□□□□□ -0.38
UPF3B-202ENST00000345865 C1orf159Q96HA4 380 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 SMIM7Q9BQ49 75 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 TCF19Q9Y242 345 aa12.7□□□□□ -0.38
UPF3B-202ENST00000345865 TRGV10A0A0A0MS01 117 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 TRAV38-1A0A0B4J264 116 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 MYOD1P15172 320 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 PSMB3P49720 205 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 GNG10P50151 68 aa12.69□□□□□ -0.38
UPF3B-202ENST00000345865 RAB7AP51149 207 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms