RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CXXC4Q9H2H0 198 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 NPVFQ9HCQ7 196 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 HSPB8Q9UJY1 196 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 A0A1W2PQD3 144 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 LIFP15018 202 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 RPS11P62280 158 aaKnown RBP eCLIP7.46□□□□□ -1.21
RTN3-202ENST00000339997 C1orf100Q5SVJ3 147 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 ZNF788Q6ZQV5 615 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 PTX4Q96A99 478 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 FAM206AQ9NX38 181 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 OR51B2Q9Y5P1 312 aa7.46□□□□□ -1.21
RTN3-202ENST00000339997 LAMA5O15230 3695 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 PRR32B1ATL7 298 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 TGFAP01135 160 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 IGHV4-34P06331 123 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 PRSS2P07478 247 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 OR4A8P0C604 315 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H1EP10412 219 aaKnown RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 GZMHP20718 246 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 GPR6P46095 362 aaPredicted RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 RPL31P62899 125 aaKnown RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 EFNB1P98172 346 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 ROM1Q03395 351 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 IL11RAQ14626 422 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 TWIST1Q15672 202 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 ECSCRQ19T08 205 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 UNQ9370/PRO34162Q6UXP9 181 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 SELENOHQ8IZQ5 122 aaKnown RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 POC1AQ8NBT0 407 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 MAFAQ8NHW3 353 aaPredicted RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 RCC1LQ96I51 464 aaKnown RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 ZNF107Q9UII5 783 aaPredicted RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 MRPS16Q9Y3D3 137 aaKnown RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 BSNQ9UPA5 3926 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 TRAV17A0A0B4J275 112 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 TMEM238LA0A1B0GVL6 79 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 A6NDN8 102 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 A6NJY4 79 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 A6NNC1 897 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 CCL20P78556 96 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 APOBEC4Q8WW27 367 aaKnown RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 ZNF837Q96EG3 531 aaPredicted RBP7.46□□□□□ -1.22
RTN3-202ENST00000339997 DNAJC4Q9NNZ3 241 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 WDR90Q96KV7 1748 aa7.46□□□□□ -1.22
RTN3-202ENST00000339997 IGHV5-10-1A0A0J9YXX1 117 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 H0YIZ8 118 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 ACP1P24666 158 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 PRDX2P32119 198 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 GLIPR1P48060 266 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 FAM27BQ5VT28 67 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 MBNL2Q5VZF2 373 aaKnown RBP7.45□□□□□ -1.22
RTN3-202ENST00000339997 FAM181AQ8N9Y4 354 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 DYNLRB2Q8TF09 96 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 BEX4Q9NWD9 120 aaPredicted RBP7.45□□□□□ -1.22
RTN3-202ENST00000339997 CLEC1BQ9P126 229 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 DOCK6Q96HP0 2047 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 SPANXN1Q5VSR9 72 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 MMD2Q8IY49 270 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 ZCCHC14Q8WYQ9 949 aaKnown RBP7.45□□□□□ -1.22
RTN3-202ENST00000339997 MRPL13Q9BYD1 178 aaKnown RBP7.45□□□□□ -1.22
RTN3-202ENST00000339997 DUSP15Q9H1R2 295 aaPredicted RBP7.45□□□□□ -1.22
RTN3-202ENST00000339997 RABAC1Q9UI14 185 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 FANCMQ8IYD8 2048 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 WNT9BO14905 357 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 MPDU1O75352 247 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 RND2P52198 227 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 QTRT1Q9BXR0 403 aaKnown RBP7.45□□□□□ -1.22
RTN3-202ENST00000339997 DLL3Q9NYJ7 618 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 METTL1Q9UBP6 276 aaKnown RBP7.45□□□□□ -1.22
RTN3-202ENST00000339997 UQCR10Q9UDW1 63 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 C2CD3Q4AC94 2353 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 IGKV3D-11A0A0A0MRZ8 115 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 IGHV3-49A0A0A0MS15 119 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 TMEM229AB2RXF0 380 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 NPIPB6E9PJ23 425 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 IGKV3-11P04433 115 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 FOXC1Q12948 553 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 RIGQ13278 110 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 KCNMB1Q16558 191 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 TMEM177Q53S58 311 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 C2orf83Q53S99 150 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 OR1N2Q8NGR9 330 aa7.45□□□□□ -1.22
RTN3-202ENST00000339997 WDR87Q6ZQQ6 2873 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 FAM181BA6NEQ2 426 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 MARCH11A6NNE9 402 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 CEACAM18A8MTB9 384 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 HOXA3O43365 443 aaPredicted RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 TFF1P04155 84 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 FSTP19883 344 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 SSPNQ14714 243 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 C5orf24Q7Z6I8 188 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 OR5R1Q8NH85 324 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 SNRNP40Q96DI7 357 aaKnown RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 DCTN5Q9BTE1 182 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 MYOZ1Q9NP98 299 aaPredicted RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 WIPI2Q9Y4P8 454 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 FAM208BQ5VWN6 2430 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.44□□□□□ -1.22
RTN3-202ENST00000339997 KLRB1Q12918 225 aa7.44□□□□□ -1.22
RTN3-202ENST00000339997 TMEM187Q14656 261 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms