RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF727A8MUV8 499 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 IGLV1-44P01699 117 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 B2MP61769 119 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 PRR27Q6MZM9 219 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 OR5B3Q8NH48 314 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 GPR146Q96CH1 333 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 SAA2-SAA4A0A096LPE2 208 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 C1QL1O75973 258 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 SAA2P0DJI9 122 aaPredicted RBP8.47□□□□□ -1.05
USP54-201ENST00000339859 IGHV1-8P0DP01 117 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 RND3P61587 244 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 RPS11P62280 158 aaKnown RBP eCLIP8.47□□□□□ -1.05
USP54-201ENST00000339859 DEFB113Q30KQ7 82 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 MORN2Q502X0 79 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 TMEM177Q53S58 311 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 RPUSD1Q9UJJ7 312 aaKnown RBP8.47□□□□□ -1.05
USP54-201ENST00000339859 IGKV1-9A0A0C4DH69 117 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 MPDU1O75352 247 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 OR10J6PQ8NGY7 276 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 RPUSD4Q96CM3 377 aaKnown RBP8.47□□□□□ -1.05
USP54-201ENST00000339859 ADORA2A-AS1P86434 159 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 SRSF7Q16629 238 aaKnown RBP eCLIP8.47□□□□□ -1.05
USP54-201ENST00000339859 NHLRC3Q5JS37 347 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 FAM78BQ5VT40 261 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 RAX2Q96IS3 184 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 A0A1W2PRX2 142 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 RAB4AP20338 218 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 OR4P4Q8NGL7 312 aa8.47□□□□□ -1.05
USP54-201ENST00000339859 RCC2Q9P258 522 aaKnown RBP8.47□□□□□ -1.05
USP54-201ENST00000339859 CEP192Q8TEP8 1941 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 ASCC3Q8N3C0 2202 aaKnown RBP8.46□□□□□ -1.05
USP54-201ENST00000339859 MELTFP08582 738 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 MYPOPQ86VE0 399 aaPredicted RBP8.46□□□□□ -1.05
USP54-201ENST00000339859 RXFP4Q8TDU9 374 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 LILRA1O75019 489 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 NPPCP23582 126 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 TFPI2P48307 235 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 ZNF79Q15937 498 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 TM4SF20Q53R12 229 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 TUBA4BQ9H853 241 aa8.46□□□□□ -1.05
USP54-201ENST00000339859 CNTRLQ7Z7A1 2325 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 REG1AP05451 166 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 EFNB1P98172 346 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 TPTE2P1Q5T6R2 138 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 ZFP82Q8N141 532 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 CD177Q8N6Q3 437 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 ITLN2Q8WWU7 325 aaPredicted RBP8.46□□□□□ -1.06
USP54-201ENST00000339859 SLC2A8Q9NY64 477 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 FBXL7Q9UJT9 491 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 TCF19Q9Y242 345 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 HELTA6NFD8 242 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 HMSDA8MTL9 139 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 C1orf196B1AJZ1 125 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 OR2J3O76001 311 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 EGR1P18146 543 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 TNFRSF9Q07011 255 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 PSG5Q15238 335 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 CLEC9AQ6UXN8 241 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 FAM210AQ96ND0 272 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 SMIM7Q9BQ49 75 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 PPP1R3EQ9H7J1 279 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 TMEM131Q92545 1883 aa8.46□□□□□ -1.06
USP54-201ENST00000339859 TRBV6-7A0A0A0MS04 114 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 PRR32B1ATL7 298 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 KRBOX1C9JBD0 128 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 HSBP1L1C9JCN9 74 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 CXorf1O96002 111 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 CD55P08174 381 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 PSG9Q00887 426 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 OR4A47Q6IF82 309 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 SLC16A13Q7RTY0 426 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 VKORC1L1Q8N0U8 176 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 AP4M1O00189 453 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 ZNF737O75373 536 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 SSTP61278 116 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 TMEM42Q69YG0 159 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 GATA4P43694 442 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 RND2P52198 227 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 AARDQ4LEZ3 155 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 HEPN1Q6WQI6 88 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 C12orf54Q6X4T0 127 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 TEX45Q8NA69 505 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 C8orf46Q8TAG6 207 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 RNF138Q8WVD3 245 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 GPR61Q9BZJ8 451 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 OR10J1P30954 320 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 GNG4P50150 75 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 SNRPD3P62318 126 aaKnown RBP8.45□□□□□ -1.06
USP54-201ENST00000339859 ZNF90Q03938 601 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 DAZAP2Q15038 168 aaPredicted RBP8.45□□□□□ -1.06
USP54-201ENST00000339859 DPPA3Q6W0C5 159 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 ANGPTL6Q8NI99 470 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 TOLLIPQ9H0E2 274 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 MMP26Q9NRE1 261 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 OTX1P32242 354 aaPredicted RBP8.45□□□□□ -1.06
USP54-201ENST00000339859 TMEM187Q14656 261 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 ZNF738Q8NE65 137 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 REG4Q9BYZ8 158 aa8.45□□□□□ -1.06
USP54-201ENST00000339859 ELF5Q9UKW6 265 aaPredicted RBP8.45□□□□□ -1.06
USP54-201ENST00000339859 ASXL3Q9C0F0 2248 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms