RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 GDF9O60383 454 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 SNRPD3P62318 126 aaKnown RBP12.37□□□□□ -0.43
COL7A1-201ENST00000328333 MMDQ15546 238 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 RBMY1BA6NDE4 496 aaKnown RBP12.37□□□□□ -0.43
COL7A1-201ENST00000328333 RBMY1EA6NEQ0 496 aaKnown RBP12.37□□□□□ -0.43
COL7A1-201ENST00000328333 UBE2CO00762 179 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 SLC25A20O43772 301 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 CD3EP07766 207 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 RBMY1DP0C7P1 496 aaKnown RBP12.37□□□□□ -0.43
COL7A1-201ENST00000328333 RBMY1A1P0DJD3 496 aaKnown RBP12.37□□□□□ -0.43
COL7A1-201ENST00000328333 RBMY1CP0DJD4 496 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 ZNF124Q15973 351 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 C2orf68Q2NKX9 166 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 H0YL77 283 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 RNASE1P07998 156 aaKnown RBP12.36□□□□□ -0.43
COL7A1-201ENST00000328333 YAE1D1Q9NRH1 226 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 KBTBD11-OT1A0A1B0GTJ5 212 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 GATAD1Q8WUU5 269 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 SLC25A2Q9BXI2 301 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 G6PC2Q9NQR9 355 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 FAM106CPP0CH98 169 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 PTGDSP41222 190 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 S100A7L2Q5SY68 101 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 ZNF257Q9Y2Q1 563 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 LAMTOR2Q9Y2Q5 125 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 NDUFA2O43678 99 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 CENPWQ5EE01 88 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 MEIG1Q5JSS6 88 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 RABAC1Q9UI14 185 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 PGPEP1LA6NFU8 196 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 TSPAN2O60636 221 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 FAM181AQ8N9Y4 354 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 H2BFSP57053 126 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 C1orf100Q5SVJ3 147 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 ORMDL3Q8N138 153 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 HDHD3Q9BSH5 251 aaPredicted RBP12.36□□□□□ -0.43
COL7A1-201ENST00000328333 FLRT3Q9NZU0 649 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 GPR132Q9UNW8 380 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 DENND4CQ5VZ89 1909 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 MPZL1O95297 269 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 TMEM242Q9NWH2 141 aa12.36□□□□□ -0.43
COL7A1-201ENST00000328333 HOXA5P20719 270 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 ALKBH6Q3KRA9 238 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 C5orf66Q9H5L9 145 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 C21orf140B9A014 251 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 CDIPTO14735 213 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 MS4A5Q9H3V2 200 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 TNFSF14O43557 240 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 COX7A1P24310 79 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 NEU1Q99519 415 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 TMEM101Q96IK0 257 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 C1QL4Q86Z23 238 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 PNKDQ8N490 385 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 WNT5AP41221 380 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 J3QW42 95 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 TNFSF15O95150 251 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 IGHV4-34P06331 123 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 P2RY6Q15077 328 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 ZNF324BQ6AW86 544 aaPredicted RBP12.35□□□□□ -0.43
COL7A1-201ENST00000328333 PHF7Q9BWX1 381 aaPredicted RBP12.35□□□□□ -0.43
COL7A1-201ENST00000328333 TNFRSF19Q9NS68 423 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 TINAGQ9UJW2 476 aa12.35□□□□□ -0.43
COL7A1-201ENST00000328333 CBLN1P23435 193 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 PEX11BO96011 259 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 SRSF4Q08170 494 aaKnown RBP12.34□□□□□ -0.43
COL7A1-201ENST00000328333 TIMM23BQ5SRD1 257 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 MDP1Q86V88 176 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 GPBAR1Q8TDU6 330 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 ADAMTSL1Q8N6G6 1762 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 DLK2Q6UY11 383 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 COX14Q96I36 57 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 PRSS27Q9BQR3 290 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 ASAH2BP0C7U1 165 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 SUMO2P61956 95 aaKnown RBP12.34□□□□□ -0.43
COL7A1-201ENST00000328333 MBNL2Q5VZF2 373 aaKnown RBP12.34□□□□□ -0.43
COL7A1-201ENST00000328333 RSPO2Q6UXX9 243 aaPredicted RBP12.34□□□□□ -0.43
COL7A1-201ENST00000328333 TRAV8-2A0A0B4J237 113 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 MGST3O14880 152 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 PPBPP02775 128 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 RUNX1Q01196 453 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 OR9G4Q8NGQ1 327 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 VKORC1L1Q8N0U8 176 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 SHISA5Q8N114 240 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 PATE1Q8WXA2 126 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 WDYHV1Q96HA8 205 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 OTOGLQ3ZCN5 2332 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 IL36BQ9NZH7 164 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 PCOLCE2Q9UKZ9 415 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 SHANK3Q9BYB0 1731 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 COL18A1P39060 1754 aa12.34□□□□□ -0.43
COL7A1-201ENST00000328333 EDIL3O43854 480 aa12.33□□□□□ -0.43
COL7A1-201ENST00000328333 LAMTOR1Q6IAA8 161 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 KIAA1549Q9HCM3 1950 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 ZP4Q12836 540 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 FBLN7Q53RD9 439 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 FBXW9Q5XUX1 488 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 TMPRSS3P57727 454 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 OR13C6PQ8NH95 151 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 FAM208BQ5VWN6 2430 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 MYO9AB2RTY4 2548 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms