RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CD99P14209 185 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 HIST1H1CP16403 213 aaKnown RBP1.77□□□□□ -2.13
HMGB1-201ENST00000326004 OGNP20774 298 aaKnown RBP1.77□□□□□ -2.13
HMGB1-201ENST00000326004 F8A1P23610 371 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 SERPINB1P30740 379 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 ACTR1BP42025 376 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 ARPP19P56211 112 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 GLO1Q04760 184 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 MGAT3Q09327 533 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 STX5Q13190 355 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 BTN1A1Q13410 526 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 C4orf26Q17RF5 130 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 DNAL1Q4LDG9 190 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 CLLU1OSQ5K130 101 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 CLEC12AQ5QGZ9 265 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 FAM162BQ5T6X4 162 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 LPCAT4Q643R3 524 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 DNM1P34Q6PK57 102 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 CASP12Q6UXS9 341 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 DCXRQ7Z4W1 244 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 ARPINQ7Z6K5 226 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 TAC4Q86UU9 113 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 CPNE9Q8IYJ1 553 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 MIR7-3HGQ8N6C7 128 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 SLC35G3Q8N808 338 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 SLC26A10Q8NG04 563 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 GRPEL2Q8TAA5 225 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 ORAOV1Q8WV07 137 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 CLDN23Q96B33 292 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 RBP7Q96R05 134 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 MROQ9BYG7 248 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 SLC25A31Q9H0C2 315 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 OR51E2Q9H255 320 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 PARP11Q9NR21 331 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 FGFR1OP2Q9NVK5 253 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 GLTPQ9NZD2 209 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 DNAJC12Q9UKB3 198 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.77□□□□□ -2.13
HMGB1-201ENST00000326004 ASB4Q9Y574 426 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 INSIG2Q9Y5U4 225 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 YLPM1P49750 1951 aaKnown RBP1.77□□□□□ -2.13
HMGB1-201ENST00000326004 ATG2AQ2TAZ0 1938 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 TANC1Q9C0D5 1861 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 STAB1Q9NY15 2570 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 KIF20BQ96Q89 1820 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 MUC22E2RYF6 1773 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-201ENST00000326004 APC2O95996 2303 aa1.77□□□□□ -2.13
HMGB1-201ENST00000326004 NOTCH1P46531 2555 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 ANKHD1Q8IWZ3 2542 aaKnown RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 CCDC168Q8NDH2 2452 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 PLXNB3Q9ULL4 1909 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 DOCK2Q92608 1830 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 TRAV8-2A0A0B4J237 113 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 IGKV1-6A0A0C4DH72 117 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 TINCRA0A1B0GVN0 87 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 MYBPHLA2RUH7 354 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 PGPA6NDG6 321 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 EFCAB10A6NFE3 127 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FAM183AA6NL82 134 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 TMEM210A6NLX4 147 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 CEACAM18A8MTB9 384 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 BTNL10A8MVZ5 291 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 C8orf87E5RJ46 101 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 F5H768 121 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 PSMD12O00232 456 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 PHYHO14832 338 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 OR2A4O95047 310 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 RNASE2P10153 161 aaKnown RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 SLC2A1P11166 492 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 SPNP16150 400 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 UGT2B7P16662 529 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 S100PP25815 95 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 MPIP34949 423 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 RAB13P51153 203 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 CMC4P56277 68 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 RAB4BP61018 213 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FAM3AP98173 230 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 DEFA6Q01524 100 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FLI1Q01543 452 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 GNA12Q03113 381 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 MEF2CQ06413 473 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FUT5Q11128 374 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 BAMBIQ13145 260 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 PDK2Q15119 407 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 LINC00303Q3SY05 128 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 ATP6AP1LQ52LC2 224 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 AKIRIN2Q53H80 203 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 ACSBG2Q5FVE4 666 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 XKRXQ6PP77 449 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 SPINT4Q6UDR6 99 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 DGAT2L6Q6ZPD8 337 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 FAM231DQ6ZW35 169 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 GALNT10Q86SR1 603 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 SLC13A5Q86YT5 568 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF101Q8IZC7 436 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 UBL4BQ8N7F7 174 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 SLC25A29Q8N8R3 303 aa1.76□□□□□ -2.13
HMGB1-201ENST00000326004 RNASE11Q8TAA1 199 aaKnown RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF420Q8TAQ5 688 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-201ENST00000326004 RNF133Q8WVZ7 376 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms