RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 CDS2O95674 445 aa12.34□□□□□ -0.43
PDLIM5-202ENST00000318007 HPRT1P00492 218 aa12.34□□□□□ -0.43
PDLIM5-202ENST00000318007 BRS3P32247 399 aa12.34□□□□□ -0.43
PDLIM5-202ENST00000318007 PDPNQ86YL7 162 aa12.34□□□□□ -0.43
PDLIM5-202ENST00000318007 LGI3Q8N145 548 aa12.34□□□□□ -0.43
PDLIM5-202ENST00000318007 RBMXL2O75526 392 aaKnown RBP12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 IGKV1-5P01602 117 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 OPN1MWP04001 364 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 OPN1MW2P0DN77 364 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 OPN1MW3P0DN78 364 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 FOSL1P15407 271 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 CXCL3P19876 107 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 MC5RP33032 325 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 OR2B8PP59922 312 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 PLGLAQ15195 96 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 LRRC75BQ2VPJ9 315 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 CADM3Q8N126 398 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 PIFOQ8TCI5 191 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 WDR89Q96FK6 387 aaPredicted RBP12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 RHOVQ96L33 236 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 CHIAQ9BZP6 476 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 MED28Q9H204 178 aa12.33□□□□□ -0.44
PDLIM5-202ENST00000318007 FN1P02751 2386 aaKnown RBP12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 TRAV3A0A0B4J244 114 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 OOSP1A8MZH6 123 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 MOSP00540 346 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 SAA1P0DJI8 122 aaPredicted RBP12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 MYOD1P15172 320 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 CD1BP29016 333 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 KIR2DS2P43631 304 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 FCN2Q15485 313 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 CD300LFQ8TDQ1 290 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 TAF15Q92804 592 aaKnown RBP eCLIP12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 SEC22AQ96IW7 307 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 FBXL15Q9H469 300 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 MGAT4CQ9UBM8 478 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 C5orf51A6NDU8 294 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 SNRPGP15A8MWD9 76 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 FAM106CPP0CH98 169 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 NQO2P16083 231 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 GGNBP1Q5YKI7 109 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 OR2T10Q8NGZ9 312 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 RRNAD1Q96FB5 475 aaKnown RBP12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 TMEM56Q96MV1 263 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 MEGF9Q9H1U4 602 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 PLEKHA2Q9HB19 425 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 TMEM140Q9NV12 185 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 TMEM56-RWDD3S4R434 201 aa12.32□□□□□ -0.44
PDLIM5-202ENST00000318007 ERVK-16P61578 105 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 GNB1P62873 340 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 PJVKQ0ZLH3 352 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 HABP2Q14520 560 aaPredicted RBP12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 SPINK9Q5DT21 86 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 OR4A47Q6IF82 309 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 H2BFWTQ7Z2G1 175 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 OR11H7Q8NGC8 314 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 GSKIPQ9P0R6 139 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 METTL1Q9UBP6 276 aaKnown RBP12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 CDC42EP3Q9UKI2 254 aa12.31□□□□□ -0.44
PDLIM5-202ENST00000318007 OR9G9P0C7N8 305 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 APELAP0DMC3 54 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 RRASP10301 218 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 BPIFB3P59826 476 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 SRSF2Q01130 221 aaKnown RBP12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 Q6ZRM9 215 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 OR10C1Q96KK4 312 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 PDCD10Q9BUL8 212 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 DBX1A6NMT0 343 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 RBFOX2O43251 390 aaKnown RBP eCLIP12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 SCGB1D2O95969 90 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 IGLV2-23P01705 113 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 IER3P46695 156 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 RRAS2P62070 204 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 CD83Q01151 205 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 LRRC37A5PQ49AS3 106 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 TMEM177Q53S58 311 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 DHRS7BQ6IAN0 325 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 FOXRED2Q8IWF2 684 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 OSR1Q8TAX0 266 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 SLC25A33Q9BSK2 321 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 RANBP3Q9H6Z4 567 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 CACNG5Q9UF02 275 aa12.3□□□□□ -0.44
PDLIM5-202ENST00000318007 A0A0B4J2A0 478 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 HRASP01112 189 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 H2BFSP57053 126 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 SRPXP78539 464 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 RBMS3Q6XE24 437 aaKnown RBP12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 C9orf139Q6ZV77 190 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 GPR146Q96CH1 333 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 SHPKQ9UHJ6 478 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 TCF19Q9Y242 345 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 PLXNB1O43157 2135 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 FAM90A9PA6NNJ1 464 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 FCN1O00602 326 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 NBR2O15453 112 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 CHST1O43916 411 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 B3GALNT1O75752 331 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 VDAC1P21796 283 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 PSG5Q15238 335 aa12.29□□□□□ -0.44
PDLIM5-202ENST00000318007 C10orf55Q5SWW7 151 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms