RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 Q6ZWC4 215 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 FAM214BQ7L5A3 538 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 SELENOHQ8IZQ5 122 aaKnown RBP9.24□□□□□ -0.93
LSM3-201ENST00000306024 SMIM12Q96EX1 92 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 WDR61Q9GZS3 305 aaKnown RBP9.24□□□□□ -0.93
LSM3-201ENST00000306024 TMEM38BQ9NVV0 291 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 TBL2Q9Y4P3 447 aaKnown RBP9.24□□□□□ -0.93
LSM3-201ENST00000306024 TRAV1-1A0A0B4J248 108 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 CTXND1A0A1B0GTU2 59 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 OR4C12Q96R67 309 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 ZNF430Q9H8G1 570 aaPredicted RBP9.24□□□□□ -0.93
LSM3-201ENST00000306024 CCL28Q9NRJ3 127 aa9.24□□□□□ -0.93
LSM3-201ENST00000306024 TRAV39A0A0B4J263 110 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 ZNF716A6NP11 495 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 KLRB1Q12918 225 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 LY6DQ14210 128 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 KIAA1644Q3SXP7 199 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 Q56UQ5 140 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 IGFL3Q6UXB1 125 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 MRPL21Q7Z2W9 205 aaKnown RBP9.23□□□□□ -0.93
LSM3-201ENST00000306024 SLC24A4Q8NFF2 622 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 UHRF2Q96PU4 802 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 MRPL13Q9BYD1 178 aaKnown RBP9.23□□□□□ -0.93
LSM3-201ENST00000306024 COX11Q9Y6N1 276 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 LYG1Q8N1E2 194 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 FAM89BQ8N5H3 189 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 ZNF837Q96EG3 531 aaPredicted RBP9.23□□□□□ -0.93
LSM3-201ENST00000306024 HSPB7Q9UBY9 170 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 ANAPC10Q9UM13 185 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 CADP27708 2225 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 CFAP54Q96N23 3096 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 IGKV1-9A0A0C4DH69 117 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 C5orf49A4QMS7 147 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 NUPR1O60356 82 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 CEACAM4O75871 244 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 LRTM2Q8N967 370 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 OR2AE1Q8NHA4 323 aa9.23□□□□□ -0.93
LSM3-201ENST00000306024 DPRXA6NFQ7 191 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 C17orf112F2Z3M2 114 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 H0Y8G0 127 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 PDCD6O75340 191 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 IGFL2Q6UWQ7 119 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 NIT1Q86X76 327 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 ZIC4Q8N9L1 334 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 OR1F12Q8NHA8 337 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 GSX1Q9H4S2 264 aaPredicted RBP9.22□□□□□ -0.93
LSM3-201ENST00000306024 GCM1Q9NP62 436 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 ABCA4P78363 2273 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 ARR3P36575 388 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 PDLIM4P50479 330 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 FABP6P51161 128 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 GATAD1Q8WUU5 269 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 MBD3L1Q8WWY6 194 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 TAF15Q92804 592 aaKnown RBP eCLIP9.22□□□□□ -0.93
LSM3-201ENST00000306024 ABHD14BQ96IU4 210 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 TMEM204Q9BSN7 226 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 ZNF319Q9P2F9 582 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 PPP1R3CQ9UQK1 317 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 USP34Q70CQ2 3546 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 INTS1Q8N201 2190 aaKnown RBP9.22□□□□□ -0.93
LSM3-201ENST00000306024 M0R1X1 148 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 CDC34P49427 236 aaPredicted RBP9.22□□□□□ -0.93
LSM3-201ENST00000306024 TEX43Q6ZNM6 134 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 SNRNP40Q96DI7 357 aaKnown RBP9.22□□□□□ -0.93
LSM3-201ENST00000306024 Q96M66 194 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 CLCF1Q9UBD9 225 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 LHFPL6Q9Y693 200 aa9.22□□□□□ -0.93
LSM3-201ENST00000306024 SRSF10O75494 262 aaKnown RBP9.21□□□□□ -0.93
LSM3-201ENST00000306024 PLA2G5P39877 138 aa9.21□□□□□ -0.93
LSM3-201ENST00000306024 PDLIM3Q53GG5 364 aaPredicted RBP9.21□□□□□ -0.93
LSM3-201ENST00000306024 FAM27BQ5VT28 67 aa9.21□□□□□ -0.93
LSM3-201ENST00000306024 OR10P1Q8NGE3 313 aa9.21□□□□□ -0.93
LSM3-201ENST00000306024 NRN1Q9NPD7 142 aa9.21□□□□□ -0.93
LSM3-201ENST00000306024 ERRFI1Q9UJM3 462 aaPredicted RBP9.21□□□□□ -0.93
LSM3-201ENST00000306024 SLC45A2Q9UMX9 530 aa9.21□□□□□ -0.93
LSM3-201ENST00000306024 PTPRBP23467 1997 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 PGPEP1LA6NFU8 196 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 VENTXO95231 258 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 IGHG3P01860 377 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 CCL2P13500 99 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 TCL1AP56279 114 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 SLC35B1P78383 322 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 ACSF3Q4G176 576 aaPredicted RBP9.21□□□□□ -0.94
LSM3-201ENST00000306024 C1orf174Q8IYL3 243 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 C1orf147Q96MC9 270 aaPredicted RBP9.21□□□□□ -0.94
LSM3-201ENST00000306024 PYGO2Q9BRQ0 406 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 MEGF9Q9H1U4 602 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 KIR2DS1A0A191URI9 304 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 SIRPB1O00241 398 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 SLC25A6P12236 298 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 KIR2DS4P43632 304 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 KIR2DS1Q14954 304 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 OCIAD2Q56VL3 154 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 TPTE2P1Q5T6R2 138 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 C9orf106Q8NAJ2 232 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 OR5D13Q8NGL4 314 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 TMEM54Q969K7 222 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 PSMG3Q9BT73 122 aaPredicted RBP9.21□□□□□ -0.94
LSM3-201ENST00000306024 LIME1Q9H400 295 aa9.21□□□□□ -0.94
LSM3-201ENST00000306024 PLSCR2Q9NRY7 297 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms