RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GFRA4Q9GZZ7 299 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 FRRS1LQ9P0K9 344 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 OR51B2Q9Y5P1 312 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 TNFSF11O14788 317 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 GPX1P07203 203 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 CEACAM6P40199 344 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 HIST1H1AQ02539 215 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 CIARTQ8N365 385 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 PRSS27Q9BQR3 290 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 DCTN5Q9BTE1 182 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 FOXD3Q9UJU5 478 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 IGKV3D-15A0A087WSY6 115 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 MEX3AA1L020 520 aaKnown RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 IQCF6A8MYZ5 107 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 IGKV3-15P01624 115 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 APCSP02743 223 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 TDGF1P13385 188 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 VKORC1L1Q8N0U8 176 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 PRR7Q8TB68 274 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 ARHGAP5-AS1Q96IT6 56 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 MRPL20Q9BYC9 149 aaKnown RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 REG4Q9BYZ8 158 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 BEX4Q9NWD9 120 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 FAM157AC9JC47 383 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 REG1BP48304 166 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 UBE2L3P68036 154 aaKnown RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 ZNF562Q6V9R5 426 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 NIT1Q86X76 327 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 LYG1Q8N1E2 194 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 SLC6A13Q9NSD5 602 aa4.55□□□□□ -1.68
SCN1A-201ENST00000303395 MRPL16Q9NX20 251 aaKnown RBP4.55□□□□□ -1.68
SCN1A-201ENST00000303395 TRAV38-1A0A0B4J264 116 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 COLCA2A8K830 154 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CEACAM5P06731 702 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 H2BFSP57053 126 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 LOXL3P58215 753 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 DUSP2Q05923 314 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 MEF2CQ06413 473 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 OR1L8Q8NGR8 309 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SPPL3Q8TCT6 385 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 RARRES2Q99969 163 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 LPAR5Q9H1C0 372 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 MED20Q9H944 212 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 AGFG2O95081 481 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 ASIPP42127 132 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 Q0VG73 95 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 PMS2CLQ68D20 193 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 LILRA6Q6PI73 481 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 INO80CQ6PI98 192 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 OR10AC1Q8NH08 325 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 LYPD6BQ8NI32 183 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CCL17Q92583 94 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 TAF15Q92804 592 aaKnown RBP eCLIP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 RCC1LQ96I51 464 aaKnown RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 PAAF1Q9BRP4 392 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 ASCL3Q9NQ33 180 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 FAM208BQ5VWN6 2430 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 TRAV9-2A0A087WT02 112 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SPTY2D1-AS1A0A0U1RR47 76 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 THY1P04216 161 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SRP19P09132 144 aaKnown RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CEACAM8P31997 349 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 GNG10P50151 68 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 LHFPL1Q86WI0 220 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 ETFBKMTQ8IXQ9 262 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 TMEM171Q8WVE6 324 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 ALKBH3Q96Q83 286 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SCNM1Q9BWG6 230 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CST9LQ9H4G1 147 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CSPG4Q6UVK1 2322 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 IGHV3-9P01782 118 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 OR9G9P0C7N8 305 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 DUTP33316 252 aaKnown RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SLC16A13Q7RTY0 426 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SRSF8Q9BRL6 282 aaKnown RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SDF2L1Q9HCN8 221 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 OTOGLQ3ZCN5 2332 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 IGLV1-36A0A0B4J1U3 117 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CDC42EP2O14613 210 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 SPINK4O60575 86 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 NAPSAO96009 420 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CD3EP07766 207 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 EMDP50402 254 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 DEFB127Q9H1M4 99 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 A0A1B0GWJ7 208 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 FAM221AA4D161 298 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 COX7A1P24310 79 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 FOXC1Q12948 553 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 P2RY6Q15077 328 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 S100A7L2Q5SY68 101 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 PRSS45Q7RTY3 260 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 VN1R4Q7Z5H5 301 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 CYB561D1Q8N8Q1 229 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 C1orf162Q8NEQ5 155 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-201ENST00000303395 DOK4Q8TEW6 326 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 KCNK17Q96T54 332 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 TECTAO75443 2155 aa4.54□□□□□ -1.68
SCN1A-201ENST00000303395 LINC01553A4QN01 128 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 PSG9Q00887 426 aa4.53□□□□□ -1.68
SCN1A-201ENST00000303395 HSD52Q0P140 79 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms