RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HEPN1Q6WQI6 88 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 TCF23Q7RTU1 214 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 SNRNP40Q96DI7 357 aaKnown RBP16.57■□□□□ 0.24
VPS53-201ENST00000291074 SEBOXQ9HB31 216 aaPredicted RBP16.57■□□□□ 0.24
VPS53-201ENST00000291074 Q9UFV3 132 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 KALRNO60229 2985 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 GYPAP02724 150 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 FABP1P07148 127 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 CT45A1Q5HYN5 189 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 STUMQ69YW2 141 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 SLC35E3Q7Z769 313 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 MRGPRGQ86SM5 289 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 DOLPP1Q86YN1 238 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 CT45A3Q8NHU0 189 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 FAM222BQ8WU58 562 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 TP53TG5Q9Y2B4 290 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 SELENOVP59797 346 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 CISD2Q8N5K1 135 aaKnown RBP16.56■□□□□ 0.24
VPS53-201ENST00000291074 OR10G9Q8NGN4 311 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 OR10G7Q8NGN6 311 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 OR4A16Q8NH70 328 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 Q8WTZ3 238 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 GAFA1Q96PS6 74 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 S1PR3Q99500 378 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 VAX2Q9UIW0 290 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 C5orf52A6NGY3 159 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 MKRN2OSH3BPM6 223 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 S100A6P06703 90 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 CXCL1P09341 107 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 ERVFRD-1P60508 538 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 WFDC8Q8IUA0 241 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 ZCCHC24Q8N2G6 241 aaKnown RBP16.56■□□□□ 0.24
VPS53-201ENST00000291074 GATAD1Q8WUU5 269 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 GSN-AS1Q9NRJ2 163 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 IL19Q9UHD0 177 aa16.56■□□□□ 0.24
VPS53-201ENST00000291074 PKDREJQ9NTG1 2253 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 A0A087WWC5 75 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 SAA2-SAA4A0A096LPE2 208 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 SAA2P0DJI9 122 aaPredicted RBP16.55■□□□□ 0.24
VPS53-201ENST00000291074 VWC2Q2TAL6 325 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 TMEM140Q9NV12 185 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 GFOD1Q9NXC2 390 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 MAS1LP35410 378 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 NBL1P41271 181 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 CCL8P80075 99 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 ELOBQ15370 118 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 SDSLQ96GA7 329 aa16.55■□□□□ 0.24
VPS53-201ENST00000291074 KBTBD11-OT1A0A1B0GTJ5 212 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 MMP23AO75900 390 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 IFNA4P05014 189 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 RPS10P46783 165 aaKnown RBP16.54■□□□□ 0.24
VPS53-201ENST00000291074 GNG10P50151 68 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 ERVK-16P61578 105 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 GNB2P62879 340 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 DDB2Q92466 427 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 MALSU1Q96EH3 234 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 IFNA10P01566 189 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 TDGF1P3P51864 188 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 CD81P60033 236 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 RELBQ01201 579 aa16.54■□□□□ 0.24
VPS53-201ENST00000291074 TGIF2-C20orf24A0A0A6YYL0 155 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 CTXND1A0A1B0GTU2 59 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 RRHO14718 337 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 IFNA1P01562 189 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 NQO2P16083 231 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 MDKP21741 143 aaPredicted RBP16.53■□□□□ 0.24
VPS53-201ENST00000291074 GCSAMLQ5JQS6 135 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 LYG1Q8N1E2 194 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 Q8N7P7 452 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 ZNF709Q8N972 641 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 HEYLQ9NQ87 328 aaPredicted RBP16.53■□□□□ 0.24
VPS53-201ENST00000291074 ZNRD1Q9P1U0 126 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 TRGV10A0A0A0MS01 117 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 RBFOX2O43251 390 aaKnown RBP eCLIP16.53■□□□□ 0.248e-7■■□□□ 13.4
VPS53-201ENST00000291074 AARDQ4LEZ3 155 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 RAB24Q969Q5 203 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 SMCO3A2RU48 225 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 PRRG2O14669 202 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 SPCS3P61009 180 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 FABP9Q0Z7S8 132 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 Q8NA96 180 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 P2RX4Q99571 388 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 ZNF251Q9BRH9 671 aa16.53■□□□□ 0.24
VPS53-201ENST00000291074 MEF2BQ02080 365 aaPredicted RBP16.52■□□□□ 0.24
VPS53-201ENST00000291074 ABHD12Q8N2K0 398 aa16.52■□□□□ 0.24
VPS53-201ENST00000291074 NIT2Q9NQR4 276 aa16.52■□□□□ 0.24
VPS53-201ENST00000291074 DPRXA6NFQ7 191 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 TNFSF4P23510 183 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 CD1BP29016 333 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 VDAC2P45880 294 aaPredicted RBP16.52■□□□□ 0.23
VPS53-201ENST00000291074 ZNF674Q2M3X9 581 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 TMEM108Q6UXF1 575 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 ZNF788Q6ZQV5 615 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 TMEM170AQ8WVE7 144 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 SDF2L1Q9HCN8 221 aa16.52■□□□□ 0.23
VPS53-201ENST00000291074 C16orf97H3BN30 126 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 UBE2CO00762 179 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 RAB7AP51149 207 aa16.51■□□□□ 0.23
VPS53-201ENST00000291074 WDR25Q64LD2 544 aaPredicted RBP16.51■□□□□ 0.23
VPS53-201ENST00000291074 ZNF383Q8NA42 475 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms