RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 WDFY4Q6ZS81 3184 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 RBKSQ9H477 322 aa9.62□□□□□ -0.87
VPS4A-201ENST00000254950 MPTX1A8MV57 137 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 YIF1AO95070 293 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 LY6G6FQ5SQ64 297 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 PXDC1Q5TGL8 231 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 ZNF787Q6DD87 383 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 UHRF2Q96PU4 802 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 SAA2-SAA4A0A096LPE2 208 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 TSPAN4O14817 238 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 FAM106CPP0CH98 169 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 SAA2P0DJI9 122 aaPredicted RBP9.61□□□□□ -0.87
VPS4A-201ENST00000254950 BPIFB3P59826 476 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 ZNF273Q14593 569 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 HERPUD1Q15011 391 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 TMEM200BQ69YZ2 307 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 C11orf53Q8IXP5 236 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 LRTM2Q8N967 370 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 KDF1Q8NAX2 398 aaPredicted RBP9.61□□□□□ -0.87
VPS4A-201ENST00000254950 SLC24A4Q8NFF2 622 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 PATZ1Q9HBE1 687 aaKnown RBP9.61□□□□□ -0.87
VPS4A-201ENST00000254950 TCF19Q9Y242 345 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 KMT2EQ8IZD2 1858 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 TOX4O94842 621 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 FFAR4Q5NUL3 377 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 VKORC1L1Q8N0U8 176 aa9.61□□□□□ -0.87
VPS4A-201ENST00000254950 MRPL20Q9BYC9 149 aaKnown RBP9.61□□□□□ -0.87
VPS4A-201ENST00000254950 METTL1Q9UBP6 276 aaKnown RBP9.61□□□□□ -0.87
VPS4A-201ENST00000254950 FOXI3A8MTJ6 420 aaPredicted RBP9.6□□□□□ -0.87
VPS4A-201ENST00000254950 TRIM77I1YAP6 450 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 RBFOX2O43251 390 aaKnown RBP eCLIP9.6□□□□□ -0.87
VPS4A-201ENST00000254950 PITX3O75364 302 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 RHEBQ15382 184 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 ZNF674Q2M3X9 581 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 TMEM155Q4W5P6 130 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 PCSK4Q6UW60 755 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 LYPD2Q6UXB3 125 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 SUN5Q8TC36 379 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 LYRM2Q9NU23 88 aaPredicted RBP9.6□□□□□ -0.87
VPS4A-201ENST00000254950 GNG13Q9P2W3 67 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 SHANK1Q9Y566 2161 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 HKR1P10072 659 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 DUTP33316 252 aaKnown RBP9.6□□□□□ -0.87
VPS4A-201ENST00000254950 ACSM6Q6P461 480 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 BTNL8Q6UX41 500 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 PDPNQ86YL7 162 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 OR5T1Q8NG75 326 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 IGKV1-6A0A0C4DH72 117 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 HOXA4Q00056 320 aaPredicted RBP9.6□□□□□ -0.87
VPS4A-201ENST00000254950 SAT2Q96F10 170 aaPredicted RBP9.6□□□□□ -0.87
VPS4A-201ENST00000254950 C18orf12Q96KH6 178 aa9.6□□□□□ -0.87
VPS4A-201ENST00000254950 SNRNP70P08621 437 aaKnown RBP9.59□□□□□ -0.87
VPS4A-201ENST00000254950 TEX36Q5VZQ5 186 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 SVBPQ8N300 66 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 ITLN2Q8WWU7 325 aaPredicted RBP9.59□□□□□ -0.87
VPS4A-201ENST00000254950 TNFRSF14Q92956 283 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 NCOR1P1Q9H4R4 102 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 GNB4Q9HAV0 340 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 FREM2Q5SZK8 3169 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 COX7A2P2O60397 106 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 SEC11BP0C7V7 166 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 COMMD1Q8N668 190 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 SMIM8Q96KF7 97 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 JKAMPQ9P055 326 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 SNAPINO95295 136 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 PRB1P04280 392 aa9.59□□□□□ -0.87
VPS4A-201ENST00000254950 DMRTC2Q8IXT2 367 aaPredicted RBP9.59□□□□□ -0.87
VPS4A-201ENST00000254950 OR7C2O60412 319 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 TMEM11P17152 192 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 DSCR9P59020 149 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 HAGHQ16775 308 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 TMUB1Q9BVT8 246 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 GOSR1O95249 250 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 ATP6V0CP27449 155 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 SP5Q6BEB4 398 aaPredicted RBP9.58□□□□□ -0.88
VPS4A-201ENST00000254950 SOX15O60248 233 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 IGHV1-8P0DP01 117 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 ZNF880Q6PDB4 577 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 OR2T10Q8NGZ9 312 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 TMEM68Q96MH6 324 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 OR5B12Q96R08 314 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 QTRT1Q9BXR0 403 aaKnown RBP9.58□□□□□ -0.88
VPS4A-201ENST00000254950 RBP4P02753 201 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 S100A6P06703 90 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 S100PP25815 95 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 MSMPQ1L6U9 139 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 IL34Q6ZMJ4 242 aa9.58□□□□□ -0.88
VPS4A-201ENST00000254950 PUS1Q9Y606 427 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS4A-201ENST00000254950 TRAV14DV4A0A0A6YYC5 116 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 F6UZH7 168 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 F12P00748 615 aaPredicted RBP9.57□□□□□ -0.88
VPS4A-201ENST00000254950 ZNF660Q6AZW8 331 aaPredicted RBP9.57□□□□□ -0.88
VPS4A-201ENST00000254950 OR4A47Q6IF82 309 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 TEX29Q8N6K0 151 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 OR5B3Q8NH48 314 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 APELAP0DMC3 54 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 PJVKQ0ZLH3 352 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 Q56UQ5 140 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 RAMP3O60896 148 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 NPBWR1P48145 328 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms