RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PHOX2AO14813 284 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 MGST3O14880 152 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 YPEL1O60688 119 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 PAGE4O60829 102 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 PFN1P07737 140 aaKnown RBP13.64□□□□□ -0.23
HOXD3-201ENST00000249440 TLE1Q04724 770 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 C4orf17Q53FE4 359 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 PRAMEF5Q5TYX0 476 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 GFI1BQ5VTD9 330 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 OR4A16Q8NH70 328 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 GATAD1Q8WUU5 269 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 STARD4Q96DR4 205 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 SNX22Q96L94 193 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 YPEL2Q96QA6 119 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 OR5B12Q96R08 314 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 DIRC2Q96SL1 478 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 DSPP15924 2871 aaKnown RBP13.63□□□□□ -0.23
HOXD3-201ENST00000249440 IGKV1D-17A0A075B6S4 117 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 SMCO3A2RU48 225 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 H7BYZ3 331 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 PROP1O75360 226 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 EGR1P18146 543 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 SPCS3P61009 180 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 NEIL1Q96FI4 390 aaPredicted RBP13.63□□□□□ -0.23
HOXD3-201ENST00000249440 PYGO2Q9BRQ0 406 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 DUSP13Q9UII6 198 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 WDR83OSQ9Y284 106 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 ATMQ13315 3056 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 CR1LQ2VPA4 569 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 PDZD11Q5EBL8 140 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 OR51G1Q8NGK1 321 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 ANAPC16Q96DE5 110 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 PLPPR2Q96GM1 343 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 DKK4Q9UBT3 224 aa13.63□□□□□ -0.23
HOXD3-201ENST00000249440 ZZEF1O43149 2961 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 RBFOX2O43251 390 aaKnown RBP eCLIP13.62□□□□□ -0.23
HOXD3-201ENST00000249440 MPDU1O75352 247 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 VENTXO95231 258 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 CGAP01215 116 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 CFHR2P36980 270 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 GALR1P47211 349 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 TGIF2LYQ8IUE0 185 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 OR52E5Q8NH55 327 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 RAB1CQ92928 201 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 PITPNC1Q9UKF7 332 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 SLC25A15Q9Y619 301 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 C11orf94C9JXX5 98 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 M0R1X1 148 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 IFNA10P01566 189 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 ERVK-16P61578 105 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 SSX9Q7RTT3 188 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 Q8N7P7 452 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 ASCL3Q9NQ33 180 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 SVILO95425 2214 aa13.62□□□□□ -0.23
HOXD3-201ENST00000249440 TMEM249Q2WGJ8 235 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 GCSAMQ8N6F7 178 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 NECAP1Q8NC96 275 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 HEYLQ9NQ87 328 aaPredicted RBP13.61□□□□□ -0.23
HOXD3-201ENST00000249440 A0A1W2PPV4 95 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 PPP5D1E7EU14 171 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 DEFA4P12838 97 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 LOXL3P58215 753 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 OR4X1Q8NH49 305 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 S1PR3Q99500 378 aa13.61□□□□□ -0.23
HOXD3-201ENST00000249440 F2RL2O00254 374 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 PDE6DO43924 150 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 HRASP01112 189 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 GYPAP02724 150 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 FABP4P15090 132 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 WT1P19544 449 aaPredicted RBP13.6□□□□□ -0.23
HOXD3-201ENST00000249440 PDLIM3Q53GG5 364 aaPredicted RBP13.6□□□□□ -0.23
HOXD3-201ENST00000249440 LRP11Q86VZ4 500 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 ZNRF1Q8ND25 227 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 S100PBPQ96BU1 408 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 OR2V2Q96R30 315 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 FAM234AQ9H0X4 552 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 GAB2Q9UQC2 676 aa13.6□□□□□ -0.23
HOXD3-201ENST00000249440 GFRA3O60609 400 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 KIR2DS2P43631 304 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 ZNF134P52741 427 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 EDDM3BP56851 147 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 RPL39P5Q59GN2 51 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 PFDN5Q99471 154 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 IGHV3OR15-7A0A075B7D8 119 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 MBD3L4A6NDZ8 208 aaPredicted RBP13.59□□□□□ -0.23
HOXD3-201ENST00000249440 MBD3L3A6NE82 208 aaPredicted RBP13.59□□□□□ -0.23
HOXD3-201ENST00000249440 MBD3L5A6NJ08 208 aaPredicted RBP13.59□□□□□ -0.23
HOXD3-201ENST00000249440 IGHV3-13P01766 116 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 OPRK1P41145 380 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 RTP5Q14D33 572 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 TREML4Q6UXN2 200 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 ZNF383Q8NA42 475 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 MBD3L2Q8NHZ7 208 aaPredicted RBP13.59□□□□□ -0.23
HOXD3-201ENST00000249440 IFI27L2Q9H2X8 130 aa13.59□□□□□ -0.23
HOXD3-201ENST00000249440 TRAV38-1A0A0B4J264 116 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 ZNF729A6NN14 1252 aaPredicted RBP13.58□□□□□ -0.23
HOXD3-201ENST00000249440 VDAC2P45880 294 aaPredicted RBP13.58□□□□□ -0.23
HOXD3-201ENST00000249440 ZNF83P51522 516 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 TMPRSS3P57727 454 aa13.58□□□□□ -0.23
HOXD3-201ENST00000249440 FAM3BP58499 235 aaPredicted RBP13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms