RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 OR4D5Q8NGN0 318 aa7.15□□□□□ -1.27
VPS4B-201ENST00000238497 IGKV1-39P01597 117 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 IGKV1-5P01602 117 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 IGKV1D-39P04432 117 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 SULT1A2P50226 295 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 PPOXP50336 477 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF146Q15072 292 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF674Q2M3X9 581 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 AVPI1Q5T686 147 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 CYB5R2Q6BCY4 276 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 PPP1R35Q8TAP8 253 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 HEYLQ9NQ87 328 aaPredicted RBP7.14□□□□□ -1.27
VPS4B-201ENST00000238497 ODAMA1E959 279 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 TMEM210A6NLX4 147 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 H7C2Y5 167 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 TNFSF4P23510 183 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 MDH2P40926 338 aaKnown RBP7.14□□□□□ -1.27
VPS4B-201ENST00000238497 ERVK11-1P61568 191 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 BAXQ07812 192 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 NCR3LG1Q68D85 454 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 MEGF10Q96KG7 1140 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 ARHGAP32A7KAX9 2087 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 IGKV1D-17A0A075B6S4 117 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 IFNA4P05014 189 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 APELAP0DMC3 54 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 COL8A2P25067 703 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF585BQ52M93 769 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 UBAC2Q8NBM4 344 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 OR5D13Q8NGL4 314 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 OR10Z1Q8NGY1 313 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 TMEM56Q96MV1 263 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 CACFD1Q9UGQ2 172 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 TMEM56-RWDD3S4R434 201 aa7.14□□□□□ -1.27
VPS4B-201ENST00000238497 LINC00473A8K010 186 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 UMAD1C9J7I0 102 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 RPL35P42766 123 aaKnown RBP7.13□□□□□ -1.27
VPS4B-201ENST00000238497 KCNJ3P48549 501 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 PEA15Q15121 130 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 NMSQ5H8A3 153 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 LINC00596Q86U02 117 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 LINC00469Q8N7U9 141 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 VSIRQ9H7M9 311 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 SAP30LQ9HAJ7 183 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 CD5LO43866 347 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 SNAPINO95295 136 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 UBE2KP61086 200 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 ARL16Q0P5N6 197 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF273Q14593 569 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 SOHLH1Q5JUK2 328 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 MOB1BQ7L9L4 216 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 Q8NFD4 153 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 OR4A16Q8NH70 328 aa7.13□□□□□ -1.27
VPS4B-201ENST00000238497 LYRM2Q9NU23 88 aaPredicted RBP7.13□□□□□ -1.27
VPS4B-201ENST00000238497 RAB19A4D1S5 217 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 NDUFS8O00217 210 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 SLC31A2O15432 143 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 FGF16O43320 207 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 MYOD1P15172 320 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 SRP14P37108 136 aaKnown RBP7.12□□□□□ -1.27
VPS4B-201ENST00000238497 RAB11AP62491 216 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 LOXL1Q08397 574 aaPredicted RBP7.12□□□□□ -1.27
VPS4B-201ENST00000238497 MSMO1Q15800 293 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 AIFM2Q9BRQ8 373 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 RNF7Q9UBF6 113 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 C17orf100A8MU93 164 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 SNRPCP09234 159 aaKnown RBP7.12□□□□□ -1.27
VPS4B-201ENST00000238497 ID3Q02535 119 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 FAM90A1Q86YD7 464 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 OR4C12Q96R67 309 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 RBKSQ9H477 322 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 SLC25A22Q9H936 323 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 RNF212BA8MTL3 300 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 CRLF1O75462 422 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 SLC38A11Q08AI6 406 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 KIAA0141Q14154 515 aaPredicted RBP7.12□□□□□ -1.27
VPS4B-201ENST00000238497 HFEQ30201 348 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF645Q8N7E2 425 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 LRTM2Q8N967 370 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF709Q8N972 641 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 R3HDM4Q96D70 268 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 SAT2Q96F10 170 aaPredicted RBP7.12□□□□□ -1.27
VPS4B-201ENST00000238497 CLCC1Q96S66 551 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 S1PR3Q99500 378 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 EGLN1Q9GZT9 426 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 WSB1Q9Y6I7 421 aa7.12□□□□□ -1.27
VPS4B-201ENST00000238497 SVEP1Q4LDE5 3571 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 IGHV3-72A0A0B4J1Y9 119 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 A0A1B0GU03 582 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 A0A1W2PRD5 423 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 A0A1W2PRF3 423 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 A0A1W2PRM7 423 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 ENSAO43768 121 aaKnown RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 IGHV1-46P01743 117 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 IGHV3-48P01763 117 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 IGHV4-31P0DP07 118 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 CCL3L1P16619 93 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 DVL1P1P54792 670 aaPredicted RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 ERVK-16P61578 105 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 HBG1P69891 147 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 HBG2P69892 147 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms