RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 C19orf35Q6ZS72 473 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 SSX8Q7RTT4 187 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 ARL14EPLP0DKL9 152 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 ZNF808Q8N4W9 903 aaPredicted RBP12.4□□□□□ -0.42
PTPRA-201ENST00000216877 C5orf17Q8NAS9 161 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 OR1L1Q8NH94 360 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 OR1F12Q8NHA8 337 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 TMEM147Q9BVK8 224 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 ATP23Q9Y6H3 246 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 FAM231BA6NCW3 169 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 FRG2CA6NGY1 282 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 CLDN14O95500 239 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 SSTR5P35346 364 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 Q0VG73 95 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 ZNF611Q8N823 705 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 NHLRC2Q8NBF2 726 aa12.4□□□□□ -0.42
PTPRA-201ENST00000216877 MRPS17Q9Y2R5 130 aaKnown RBP12.4□□□□□ -0.42
PTPRA-201ENST00000216877 H0Y980 276 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 MYF5P13349 255 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 AZU1P20160 251 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 CLDN15P56746 228 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 SPEGQ15772 3267 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 BVES-AS1Q5T3Y7 98 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 TDHQ8IZJ6 230 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 SSMEM1Q8WWF3 244 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 GP6Q9HCN6 339 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 MLNRO43193 412 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 ACTL6BO94805 426 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 CELA2BP08218 269 aaPredicted RBP12.39□□□□□ -0.43
PTPRA-201ENST00000216877 ESDP10768 282 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 DRD1P21728 446 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 OR10W1Q8NGF6 305 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 IL36RNQ9UBH0 155 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 IGHV3-64DA0A0J9YX35 117 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 TMEM251Q8N6I4 163 aa12.39□□□□□ -0.43
PTPRA-201ENST00000216877 SF3B5Q9BWJ5 86 aaKnown RBP12.39□□□□□ -0.43
PTPRA-201ENST00000216877 USF3Q68DE3 2245 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 TMEM211Q6ICI0 200 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 OR13H1Q8NG92 308 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 BMFQ96LC9 184 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 LRRC61Q9BV99 259 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 PILRBQ9UKJ0 227 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 BDP1A6H8Y1 2624 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 DEGS1O15121 323 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 RBPJQ06330 500 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 ZDHHC16Q969W1 377 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 SPSB1Q96BD6 273 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 HS3ST3A1Q9Y663 406 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 RHBDL1O75783 438 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 RPL8P62917 257 aaKnown RBP12.38□□□□□ -0.43
PTPRA-201ENST00000216877 RHOGP84095 191 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 FAM71F2Q6NXP2 309 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 PQLC2Q6ZP29 291 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 ZNF295-AS1Q8N0V1 137 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 OR4F17Q8NGA8 305 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 SSBP4Q9BWG4 385 aaPredicted RBP12.38□□□□□ -0.43
PTPRA-201ENST00000216877 NPCDR1Q9BY65 106 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 NBASA2RRP1 2371 aa12.38□□□□□ -0.43
PTPRA-201ENST00000216877 LIPT2A6NK58 231 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 C2CD4DB7Z1M9 353 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 TIAF1O95411 115 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 IGHMP01871 453 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 COL8A2P25067 703 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 G6PCP35575 357 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 GNG4P50150 75 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 WDR73Q6P4I2 378 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 CLDN23Q96B33 292 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 EPHA8P29322 1005 aaPredicted RBP12.37□□□□□ -0.43
PTPRA-201ENST00000216877 CEACAM3P40198 252 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 MFAP2P55001 183 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 FOXA3P55318 350 aaPredicted RBP12.37□□□□□ -0.43
PTPRA-201ENST00000216877 EBLN2Q6P2I7 272 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 CRIP3Q6Q6R5 217 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 APC2O95996 2303 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 KIR2DS1A0A191URI9 304 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 ZG16O60844 167 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 KIR2DS4P43632 304 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 LGALS4P56470 323 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 KIR2DS1Q14954 304 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 ZNF788Q6ZQV5 615 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 METTL7AQ9H8H3 244 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 ALKBH4Q9NXW9 302 aa12.37□□□□□ -0.43
PTPRA-201ENST00000216877 FAM181BA6NEQ2 426 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 BMPR1BO00238 502 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 RBM11P57052 281 aaKnown RBP12.36□□□□□ -0.43
PTPRA-201ENST00000216877 TIGITQ495A1 244 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 KIR3DL3Q8N743 410 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 OR2D2Q9H210 308 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 KCNIP2Q9NS61 270 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 RARRES3Q9UL19 164 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 ZNF835Q9Y2P0 537 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 LINC00869P0C866 280 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 Q6ZPA2 131 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 PERPQ96FX8 193 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 IL36GQ9NZH8 169 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 RAB9AP51151 201 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 FAM69BQ5VUD6 431 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 LHFPL2Q6ZUX7 228 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 ULBP2Q9BZM5 246 aa12.36□□□□□ -0.43
PTPRA-201ENST00000216877 OR1A1Q9P1Q5 309 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms