RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 ATG9AQ7Z3C6 839 aa17.4■□□□□ 0.38
LINC00339-211ENST00000641009 LRRFIP2Q9Y608 721 aaKnown RBP17.4■□□□□ 0.38
LINC00339-211ENST00000641009 AK9Q5TCS8 1911 aa17.39■□□□□ 0.37
LINC00339-211ENST00000641009 KIF16BQ96L93 1317 aa17.39■□□□□ 0.37
LINC00339-211ENST00000641009 SPRYD7Q5W111 196 aa17.39■□□□□ 0.37
LINC00339-211ENST00000641009 TBC1D22AQ8WUA7 517 aa17.39■□□□□ 0.37
LINC00339-211ENST00000641009 SLC10A4Q96EP9 437 aa17.39■□□□□ 0.37
LINC00339-211ENST00000641009 TCP10L2B9ZVM9 353 aa17.38■□□□□ 0.37
LINC00339-211ENST00000641009 SLC5A1P13866 664 aa17.38■□□□□ 0.37
LINC00339-211ENST00000641009 SREBF2Q12772 1141 aa17.38■□□□□ 0.37
LINC00339-211ENST00000641009 TNFAIP1Q13829 316 aa17.38■□□□□ 0.37
LINC00339-211ENST00000641009 CDAN1Q8IWY9 1227 aa17.38■□□□□ 0.37
LINC00339-211ENST00000641009 MEIS3Q99687 375 aa17.38■□□□□ 0.37
LINC00339-211ENST00000641009 CENPFP49454 3210 aa17.38■□□□□ 0.37
LINC00339-211ENST00000641009 USP2O75604 605 aaPredicted RBP17.37■□□□□ 0.37
LINC00339-211ENST00000641009 LPIN2Q92539 896 aa17.37■□□□□ 0.37
LINC00339-211ENST00000641009 MYH2Q9UKX2 1941 aa17.37■□□□□ 0.37
LINC00339-211ENST00000641009 TEKT1Q969V4 418 aa17.37■□□□□ 0.37
LINC00339-211ENST00000641009 TEPSINQ96N21 525 aa17.37■□□□□ 0.37
LINC00339-211ENST00000641009 PA2G4Q9UQ80 394 aaKnown RBP17.37■□□□□ 0.37
LINC00339-211ENST00000641009 HTTP42858 3142 aa17.36■□□□□ 0.37
LINC00339-211ENST00000641009 CIAO1O76071 339 aa17.36■□□□□ 0.37
LINC00339-211ENST00000641009 IREB2P48200 963 aaKnown RBP17.36■□□□□ 0.37
LINC00339-211ENST00000641009 CACNB3P54284 484 aa17.36■□□□□ 0.37
LINC00339-211ENST00000641009 HDLBPQ00341 1268 aaKnown RBP17.36■□□□□ 0.37
LINC00339-211ENST00000641009 ZNF296Q8WUU4 475 aaPredicted RBP17.36■□□□□ 0.37
LINC00339-211ENST00000641009 WNK4Q96J92 1243 aa17.36■□□□□ 0.37
LINC00339-211ENST00000641009 TMEM39BQ9GZU3 492 aa17.36■□□□□ 0.37
LINC00339-211ENST00000641009 ATP2B3Q16720 1220 aa17.35■□□□□ 0.37
LINC00339-211ENST00000641009 INTS3Q68E01 1043 aaKnown RBP17.35■□□□□ 0.37
LINC00339-211ENST00000641009 CTU1Q7Z7A3 348 aaKnown RBP17.35■□□□□ 0.37
LINC00339-211ENST00000641009 ARHGAP45Q92619 1136 aa17.35■□□□□ 0.37
LINC00339-211ENST00000641009 CEP126Q9P2H0 1117 aa17.35■□□□□ 0.37
LINC00339-211ENST00000641009 FBXO3Q9UK99 471 aa17.35■□□□□ 0.37
LINC00339-211ENST00000641009 ZBTB48P10074 688 aaPredicted RBP17.34■□□□□ 0.37
LINC00339-211ENST00000641009 TNNI2P48788 182 aa17.34■□□□□ 0.37
LINC00339-211ENST00000641009 ANKRD13AQ8IZ07 590 aa17.34■□□□□ 0.37
LINC00339-211ENST00000641009 ZDHHC15Q96MV8 337 aa17.34■□□□□ 0.37
LINC00339-211ENST00000641009 R3HDMLQ9H3Y0 253 aa17.34■□□□□ 0.37
LINC00339-211ENST00000641009 HDAC5Q9UQL6 1122 aa17.34■□□□□ 0.37
LINC00339-211ENST00000641009 TNNQ9UQP3 1299 aa17.34■□□□□ 0.37
LINC00339-211ENST00000641009 SUGT1Q9Y2Z0 365 aa17.34■□□□□ 0.37
LINC00339-211ENST00000641009 MAST3O60307 1309 aa17.33■□□□□ 0.37
LINC00339-211ENST00000641009 MANSC4A6NHS7 340 aaPredicted RBP17.33■□□□□ 0.37
LINC00339-211ENST00000641009 UNCXA6NJT0 531 aa17.33■□□□□ 0.37
LINC00339-211ENST00000641009 GPR25O00155 361 aa17.33■□□□□ 0.37
LINC00339-211ENST00000641009 BCAR3O75815 825 aa17.33■□□□□ 0.37
LINC00339-211ENST00000641009 GJA5P36382 358 aa17.33■□□□□ 0.37
LINC00339-211ENST00000641009 TRIM27P14373 513 aa17.32■□□□□ 0.36
LINC00339-211ENST00000641009 IL15P40933 162 aaPredicted RBP17.32■□□□□ 0.36
LINC00339-211ENST00000641009 APOBEC3HQ6NTF7 200 aaKnown RBP17.32■□□□□ 0.36
LINC00339-211ENST00000641009 IFNL1Q8IU54 200 aa17.32■□□□□ 0.36
LINC00339-211ENST00000641009 WDR66Q8TBY9 1149 aa17.32■□□□□ 0.36
LINC00339-211ENST00000641009 FRAT1Q92837 279 aaPredicted RBP17.32■□□□□ 0.36
LINC00339-211ENST00000641009 MRIQ9BWK5 157 aa17.32■□□□□ 0.36
LINC00339-211ENST00000641009 ELP3Q9H9T3 547 aa17.32■□□□□ 0.36
LINC00339-211ENST00000641009 COPRSQ9NQ92 184 aa17.32■□□□□ 0.36
LINC00339-211ENST00000641009 IGF2BP3O00425 579 aaKnown RBP eCLIP17.31■□□□□ 0.36
LINC00339-211ENST00000641009 GNAI3P08754 354 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 PHKA1P46020 1223 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 RGS19P49795 217 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 INHBEP58166 350 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 MIER1Q8N108 512 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 CFHR5Q9BXR6 569 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 ADORA1P30542 326 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 NOM1Q5C9Z4 860 aaKnown RBP17.31■□□□□ 0.36
LINC00339-211ENST00000641009 HHIPL2Q6UWX4 724 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 ATF7IPQ6VMQ6 1270 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.31■□□□□ 0.36
LINC00339-211ENST00000641009 OPTNQ96CV9 577 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 TMOD2Q9NZR1 351 aa17.31■□□□□ 0.36
LINC00339-211ENST00000641009 IPO8O15397 1037 aaKnown RBP17.3■□□□□ 0.36
LINC00339-211ENST00000641009 SRGAP3O43295 1099 aa17.3■□□□□ 0.36
LINC00339-211ENST00000641009 ALDH1A1P00352 501 aa17.3■□□□□ 0.36
LINC00339-211ENST00000641009 PRDX5P30044 214 aa17.3■□□□□ 0.36
LINC00339-211ENST00000641009 DIXDC1Q155Q3 683 aa17.3■□□□□ 0.36
LINC00339-211ENST00000641009 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.3■□□□□ 0.36
LINC00339-211ENST00000641009 CNKSR2Q8WXI2 1034 aa17.3■□□□□ 0.36
LINC00339-211ENST00000641009 CLUAP1Q96AJ1 413 aa17.3■□□□□ 0.36
LINC00339-211ENST00000641009 GNL3LQ9NVN8 582 aaKnown RBP17.3■□□□□ 0.36
LINC00339-211ENST00000641009 DOCK2Q92608 1830 aa17.29■□□□□ 0.36
LINC00339-211ENST00000641009 TIMM10P62072 90 aa17.29■□□□□ 0.36
LINC00339-211ENST00000641009 HNRNPUQ00839 825 aaKnown RBP eCLIP17.29■□□□□ 0.36
LINC00339-211ENST00000641009 MLLT1Q03111 559 aaPredicted RBP17.29■□□□□ 0.36
LINC00339-211ENST00000641009 VGLL4Q14135 290 aa17.29■□□□□ 0.36
LINC00339-211ENST00000641009 FAM83AQ86UY5 434 aa17.29■□□□□ 0.36
LINC00339-211ENST00000641009 DAGLAQ9Y4D2 1042 aa17.29■□□□□ 0.36
LINC00339-211ENST00000641009 FKTNO75072 461 aa17.28■□□□□ 0.36
LINC00339-211ENST00000641009 LDHBP07195 334 aaKnown RBP17.28■□□□□ 0.36
LINC00339-211ENST00000641009 MAP3K9P80192 1104 aa17.28■□□□□ 0.36
LINC00339-211ENST00000641009 MTX1Q13505 466 aa17.28■□□□□ 0.36
LINC00339-211ENST00000641009 FKBP1CQ5VVH2 108 aa17.28■□□□□ 0.36
LINC00339-211ENST00000641009 CCDC102BQ68D86 513 aa17.28■□□□□ 0.36
LINC00339-211ENST00000641009 PTPN18Q99952 460 aa17.28■□□□□ 0.36
LINC00339-211ENST00000641009 BRCA2P51587 3418 aa17.27■□□□□ 0.36
LINC00339-211ENST00000641009 TFCP2Q12800 502 aa17.27■□□□□ 0.36
LINC00339-211ENST00000641009 DIEXFQ68CQ4 756 aaKnown RBP17.27■□□□□ 0.36
LINC00339-211ENST00000641009 DENND2AQ9ULE3 1009 aa17.27■□□□□ 0.36
LINC00339-211ENST00000641009 HPS5Q9UPZ3 1129 aa17.27■□□□□ 0.36
LINC00339-211ENST00000641009 CSADQ9Y600 493 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms