RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SMARCE1Q969G3 411 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 FAM135BQ49AJ0 1406 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 MROH5Q6ZUA9 1318 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 GNA11P29992 359 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 SCNN1DP51172 638 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 MNS1Q8NEH6 495 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 CSRNP1Q96S65 589 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ZBTB21Q9ULJ3 1066 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 GON4LQ3T8J9 2241 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 GOLGA8AA7E2F4 631 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 GOLGA8BA8MQT2 603 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 F6X3S4 739 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 RARSP54136 660 aaKnown RBP5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ARID3AQ99856 593 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ZNF341Q9BYN7 854 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 TRPC6Q9Y210 931 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 EXOC6BQ9Y2D4 811 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 IARSP41252 1262 aaKnown RBP5.74□□□□□ -1.49
SCN1A-218ENST00000640036 KCNQ4P56696 695 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 CERKLQ49MI3 558 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ARHGEF16Q5VV41 709 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 NUDT18Q6ZVK8 323 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 EXOC8Q8IYI6 725 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ZNF277Q9NRM2 450 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-218ENST00000640036 DDX11L8A8MPP1 907 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 POTEB2H3BUK9 544 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 UBA7P41226 1012 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 BLMP54132 1417 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-218ENST00000640036 CFAP58Q5T655 872 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 TTC37Q6PGP7 1564 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 HEATR3Q7Z4Q2 680 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 MCF2L2Q86YR7 1114 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ERO1AQ96HE7 468 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 EDC4Q6P2E9 1401 aaKnown RBP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 FCHSD1Q86WN1 690 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 METTL13Q8N6R0 699 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 ADPGKQ9BRR6 497 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 ASAP1Q9ULH1 1129 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 PARP1P09874 1014 aaKnown RBP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 MLH3Q9UHC1 1453 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 PHKG2P15735 406 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 MSANTD4Q8NCY6 345 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 NAP1L4Q99733 375 aaKnown RBP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 V9GYY5 206 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 CALML3P27482 149 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 FCGRTP55899 365 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 STK3Q13188 491 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 VPS36Q86VN1 386 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 NCOA7Q8NI08 942 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 DYDC1Q8WWB3 177 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 LPIN2Q92539 896 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 PARK7Q99497 189 aaKnown RBP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 EFCC1Q9HA90 598 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 ZNF215Q9UL58 517 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 CAMSAP1Q5T5Y3 1602 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 CCP110O43303 1012 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 EPHX2P34913 555 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 KIF4BQ2VIQ3 1234 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 CLEC4GQ6UXB4 293 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 CNOT7Q9UIV1 285 aaKnown RBP5.73□□□□□ -1.49
SCN1A-218ENST00000640036 ELMOD1Q8N336 334 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 TRIM47Q96LD4 638 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 BRIP1Q9BX63 1249 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 BABAM1Q9NWV8 329 aa5.73□□□□□ -1.49
SCN1A-218ENST00000640036 RIOK3O14730 519 aaKnown RBP5.72□□□□□ -1.49
SCN1A-218ENST00000640036 PDIA4P13667 645 aaKnown RBP5.72□□□□□ -1.49
SCN1A-218ENST00000640036 SMTNP53814 917 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ALDH1L2Q3SY69 923 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 SLITRK6Q9H5Y7 841 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 RAB23Q9ULC3 237 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 PSMD1Q99460 953 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ZNF804BA4D1E1 1349 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ALAS1P13196 640 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 COPB2P35606 906 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 BRPF1P55201 1214 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-218ENST00000640036 SNAPC2Q13487 334 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 MTHFSDQ2M296 383 aaKnown RBP5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ARRDC4Q8NCT1 418 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 PANK1Q8TE04 598 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 EVI5LQ96CN4 794 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 COA1Q9GZY4 146 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ASNSP08243 561 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 MIGA1Q8NAN2 632 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ECHDC1Q9NTX5 307 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ZNRF3Q9ULT6 936 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 USP6P35125 1406 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ALS2CR12Q96Q35 445 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 GPCPD1Q9NPB8 672 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 CARMIL3Q8ND23 1372 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 CCDC66A2RUB6 948 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 M0R2C6 588 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 STAMBPO95630 424 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 STRN3Q13033 797 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ARHGEF25Q86VW2 580 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 WRNIP1Q96S55 665 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 PYM1Q9BRP8 204 aaKnown RBP5.72□□□□□ -1.49
SCN1A-218ENST00000640036 NARFQ9UHQ1 456 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 ERBB4Q15303 1308 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 TYW5A2RUC4 315 aaKnown RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms