RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 SMC4Q9NTJ3 1288 aa23.16■■□□□ 1.3
CLN6-220ENST00000637450 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.16■■□□□ 1.3
CLN6-220ENST00000637450 FRAT2O75474 233 aaPredicted RBP23.15■■□□□ 1.3
CLN6-220ENST00000637450 FGFR2P21802 821 aa23.15■■□□□ 1.3
CLN6-220ENST00000637450 RFX5P48382 616 aaPredicted RBP23.15■■□□□ 1.3
CLN6-220ENST00000637450 CHAF1AQ13111 956 aaPredicted RBP23.15■■□□□ 1.3
CLN6-220ENST00000637450 HDLBPQ00341 1268 aaKnown RBP23.14■■□□□ 1.29
CLN6-220ENST00000637450 IFNL1Q8IU54 200 aa23.14■■□□□ 1.29
CLN6-220ENST00000637450 ANKRD13AQ8IZ07 590 aa23.14■■□□□ 1.29
CLN6-220ENST00000637450 TEPSINQ96N21 525 aa23.14■■□□□ 1.29
CLN6-220ENST00000637450 MRIQ9BWK5 157 aa23.14■■□□□ 1.29
CLN6-220ENST00000637450 KIF16BQ96L93 1317 aa23.13■■□□□ 1.29
CLN6-220ENST00000637450 EYA2O00167 538 aa23.13■■□□□ 1.29
CLN6-220ENST00000637450 IFIT1P09914 478 aaKnown RBP23.13■■□□□ 1.29
CLN6-220ENST00000637450 CT47B1P0C2W7 299 aaPredicted RBP23.13■■□□□ 1.29
CLN6-220ENST00000637450 PUM3Q15397 648 aaKnown RBP23.13■■□□□ 1.29
CLN6-220ENST00000637450 HPS5Q9UPZ3 1129 aa23.13■■□□□ 1.29
CLN6-220ENST00000637450 TCP10L2B9ZVM9 353 aa23.12■■□□□ 1.29
CLN6-220ENST00000637450 FKTNO75072 461 aa23.12■■□□□ 1.29
CLN6-220ENST00000637450 ECM29Q5VYK3 1845 aa23.12■■□□□ 1.29
CLN6-220ENST00000637450 GJA5P36382 358 aa23.11■■□□□ 1.29
CLN6-220ENST00000637450 CDAN1Q8IWY9 1227 aa23.11■■□□□ 1.29
CLN6-220ENST00000637450 TMEM39BQ9GZU3 492 aa23.11■■□□□ 1.29
CLN6-220ENST00000637450 NOB1Q9ULX3 412 aaKnown RBP23.11■■□□□ 1.29
CLN6-220ENST00000637450 IGF2BP3O00425 579 aaKnown RBP eCLIP23.1■■□□□ 1.29
CLN6-220ENST00000637450 TNNI2P48788 182 aa23.1■■□□□ 1.29
CLN6-220ENST00000637450 SOX10P56693 466 aa23.1■■□□□ 1.29
CLN6-220ENST00000637450 ATG9AQ7Z3C6 839 aa23.1■■□□□ 1.29
CLN6-220ENST00000637450 TEKT1Q969V4 418 aa23.1■■□□□ 1.29
CLN6-220ENST00000637450 SUGT1Q9Y2Z0 365 aa23.1■■□□□ 1.29
CLN6-220ENST00000637450 LPIN2Q92539 896 aa23.09■■□□□ 1.29
CLN6-220ENST00000637450 ZDHHC15Q96MV8 337 aa23.09■■□□□ 1.29
CLN6-220ENST00000637450 TESPA1A2RU30 521 aaPredicted RBP23.08■■□□□ 1.29
CLN6-220ENST00000637450 UBTFL1P0CB47 393 aaPredicted RBP23.08■■□□□ 1.29
CLN6-220ENST00000637450 SLC5A1P13866 664 aa23.08■■□□□ 1.29
CLN6-220ENST00000637450 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.08■■□□□ 1.29
CLN6-220ENST00000637450 ELP3Q9H9T3 547 aa23.08■■□□□ 1.29
CLN6-220ENST00000637450 FBXO3Q9UK99 471 aa23.08■■□□□ 1.29
CLN6-220ENST00000637450 MAP3K9P80192 1104 aa23.07■■□□□ 1.28
CLN6-220ENST00000637450 OTUD7BQ6GQQ9 843 aa23.07■■□□□ 1.28
CLN6-220ENST00000637450 APOBEC3HQ6NTF7 200 aaKnown RBP23.07■■□□□ 1.28
CLN6-220ENST00000637450 FBXO46Q6PJ61 603 aaPredicted RBP23.07■■□□□ 1.28
CLN6-220ENST00000637450 PTPN18Q99952 460 aa23.07■■□□□ 1.28
CLN6-220ENST00000637450 API5Q9BZZ5 524 aaKnown RBP23.07■■□□□ 1.28
CLN6-220ENST00000637450 CCER2I3L3R5 266 aa23.06■■□□□ 1.28
CLN6-220ENST00000637450 CACNB3P54284 484 aa23.06■■□□□ 1.28
CLN6-220ENST00000637450 HHIPL2Q6UWX4 724 aa23.06■■□□□ 1.28
CLN6-220ENST00000637450 OPTNQ96CV9 577 aa23.06■■□□□ 1.28
CLN6-220ENST00000637450 MAST3O60307 1309 aa23.06■■□□□ 1.28
CLN6-220ENST00000637450 CIAO1O76071 339 aa23.05■■□□□ 1.28
CLN6-220ENST00000637450 FKBP1CQ5VVH2 108 aa23.05■■□□□ 1.28
CLN6-220ENST00000637450 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.05■■□□□ 1.28
CLN6-220ENST00000637450 WDR66Q8TBY9 1149 aa23.05■■□□□ 1.28
CLN6-220ENST00000637450 MS4A4AQ96JQ5 239 aa23.05■■□□□ 1.28
CLN6-220ENST00000637450 TNRC18O15417 2968 aaPredicted RBP23.04■■□□□ 1.28
CLN6-220ENST00000637450 VGLL4Q14135 290 aa23.04■■□□□ 1.28
CLN6-220ENST00000637450 FAM83AQ86UY5 434 aa23.04■■□□□ 1.28
CLN6-220ENST00000637450 SIL1Q9H173 461 aa23.04■■□□□ 1.28
CLN6-220ENST00000637450 TMOD2Q9NZR1 351 aa23.04■■□□□ 1.28
CLN6-220ENST00000637450 CEP126Q9P2H0 1117 aa23.04■■□□□ 1.28
CLN6-220ENST00000637450 HDAC5Q9UQL6 1122 aa23.04■■□□□ 1.28
CLN6-220ENST00000637450 ARAP2Q8WZ64 1704 aa23.04■■□□□ 1.28
CLN6-220ENST00000637450 RARSP54136 660 aaKnown RBP23.03■■□□□ 1.28
CLN6-220ENST00000637450 CRHR2Q13324 411 aa23.03■■□□□ 1.28
CLN6-220ENST00000637450 CNKSR2Q8WXI2 1034 aa23.03■■□□□ 1.28
CLN6-220ENST00000637450 LRRFIP2Q9Y608 721 aaKnown RBP23.03■■□□□ 1.28
CLN6-220ENST00000637450 ATP2B3Q16720 1220 aa23.02■■□□□ 1.28
CLN6-220ENST00000637450 CSADQ9Y600 493 aa23.02■■□□□ 1.28
CLN6-220ENST00000637450 IL15P40933 162 aaPredicted RBP23.01■■□□□ 1.27
CLN6-220ENST00000637450 ARHGAP45Q92619 1136 aa23.01■■□□□ 1.27
CLN6-220ENST00000637450 TRIM17Q9Y577 477 aa23.01■■□□□ 1.27
CLN6-220ENST00000637450 GTF2A2P52657 109 aa23■■□□□ 1.27
CLN6-220ENST00000637450 OTOP1Q7RTM1 612 aa23■■□□□ 1.27
CLN6-220ENST00000637450 BRI3BPQ8WY22 251 aa23■■□□□ 1.27
CLN6-220ENST00000637450 HOOK2Q96ED9 719 aa23■■□□□ 1.27
CLN6-220ENST00000637450 MEIS3Q99687 375 aa23■■□□□ 1.27
CLN6-220ENST00000637450 COPRSQ9NQ92 184 aa23■■□□□ 1.27
CLN6-220ENST00000637450 GNL3LQ9NVN8 582 aaKnown RBP23■■□□□ 1.27
CLN6-220ENST00000637450 PA2G4Q9UQ80 394 aaKnown RBP23■■□□□ 1.27
CLN6-220ENST00000637450 INTS3Q68E01 1043 aaKnown RBP22.99■■□□□ 1.27
CLN6-220ENST00000637450 ERO1AQ96HE7 468 aa22.99■■□□□ 1.27
CLN6-220ENST00000637450 CCL15-CCL14A0A0B4J2E2 113 aa22.98■■□□□ 1.27
CLN6-220ENST00000637450 CCL15Q16663 113 aa22.98■■□□□ 1.27
CLN6-220ENST00000637450 OTUD5Q96G74 571 aa22.98■■□□□ 1.27
CLN6-220ENST00000637450 DAGLAQ9Y4D2 1042 aa22.98■■□□□ 1.27
CLN6-220ENST00000637450 SNCAIPQ9Y6H5 919 aa22.98■■□□□ 1.27
CLN6-220ENST00000637450 LAMB1P07942 1786 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 SPDYE5A6NIY4 337 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 ZBTB22O15209 634 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 PRDX5P30044 214 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 SP3Q02447 781 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 DIXDC1Q155Q3 683 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 CD99L2Q8TCZ2 262 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 FAM151AQ8WW52 585 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 ZKSCAN4Q969J2 545 aaPredicted RBP22.97■■□□□ 1.27
CLN6-220ENST00000637450 WRNIP1Q96S55 665 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 DENND2AQ9ULE3 1009 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 HTTP42858 3142 aa22.97■■□□□ 1.27
CLN6-220ENST00000637450 SEMA3EO15041 775 aa22.96■■□□□ 1.27
CLN6-220ENST00000637450 LDHBP07195 334 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms