RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 MAST2Q6P0Q8 1798 aa22.8■■□□□ 1.24
CLN3-258ENST00000637184 MFSD14BQ5SR56 506 aa22.8■■□□□ 1.24
CLN3-258ENST00000637184 FBXW7Q969H0 707 aa22.8■■□□□ 1.24
CLN3-258ENST00000637184 DSCC1Q9BVC3 393 aa22.8■■□□□ 1.24
CLN3-258ENST00000637184 RBM8AQ9Y5S9 174 aaKnown RBP22.8■■□□□ 1.24
CLN3-258ENST00000637184 ECE2O60344 883 aa22.79■■□□□ 1.24
CLN3-258ENST00000637184 TTLL5Q6EMB2 1281 aa22.79■■□□□ 1.24
CLN3-258ENST00000637184 VPS33BQ9H267 617 aa22.79■■□□□ 1.24
CLN3-258ENST00000637184 HSPD1P10809 573 aaKnown RBP22.78■■□□□ 1.24
CLN3-258ENST00000637184 ANAPC15P60006 121 aa22.78■■□□□ 1.24
CLN3-258ENST00000637184 VPS53Q5VIR6 699 aa22.78■■□□□ 1.24
CLN3-258ENST00000637184 KIF2CQ99661 725 aa22.78■■□□□ 1.24
CLN3-258ENST00000637184 FHDC1Q9C0D6 1143 aaPredicted RBP22.78■■□□□ 1.24
CLN3-258ENST00000637184 U3KPZ7 1027 aaPredicted RBP22.78■■□□□ 1.24
CLN3-258ENST00000637184 NECTIN1Q15223 517 aa22.78■■□□□ 1.24
CLN3-258ENST00000637184 ZNF384Q8TF68 577 aa22.78■■□□□ 1.24
CLN3-258ENST00000637184 ZNF277Q9NRM2 450 aaPredicted RBP22.78■■□□□ 1.24
CLN3-258ENST00000637184 FER1L6Q2WGJ9 1857 aa22.78■■□□□ 1.24
CLN3-258ENST00000637184 MBD4O95243 580 aa22.77■■□□□ 1.24
CLN3-258ENST00000637184 ADGRA1Q86SQ6 560 aa22.77■■□□□ 1.24
CLN3-258ENST00000637184 MIGA1Q8NAN2 632 aa22.77■■□□□ 1.24
CLN3-258ENST00000637184 PALD1Q9ULE6 856 aa22.77■■□□□ 1.24
CLN3-258ENST00000637184 GSTO1P78417 241 aa22.76■■□□□ 1.23
CLN3-258ENST00000637184 LARGE2Q8N3Y3 721 aa22.76■■□□□ 1.23
CLN3-258ENST00000637184 STRBPQ96SI9 672 aaKnown RBP22.76■■□□□ 1.23
CLN3-258ENST00000637184 TAOK3Q9H2K8 898 aa22.76■■□□□ 1.23
CLN3-258ENST00000637184 ARFGEF1Q9Y6D6 1849 aa22.76■■□□□ 1.23
CLN3-258ENST00000637184 MAGEB6P1A0A0J9YX57 407 aa22.76■■□□□ 1.23
CLN3-258ENST00000637184 GRIK5Q16478 980 aa22.76■■□□□ 1.23
CLN3-258ENST00000637184 RNF20Q5VTR2 975 aa22.76■■□□□ 1.23
CLN3-258ENST00000637184 CREB3L3Q68CJ9 461 aa22.75■■□□□ 1.23
CLN3-258ENST00000637184 DDRGK1Q96HY6 314 aa22.75■■□□□ 1.23
CLN3-258ENST00000637184 ARMT1Q9H993 441 aa22.75■■□□□ 1.23
CLN3-258ENST00000637184 SUGT1Q9Y2Z0 365 aa22.75■■□□□ 1.23
CLN3-258ENST00000637184 ZKSCAN1P17029 563 aaPredicted RBP22.74■■□□□ 1.23
CLN3-258ENST00000637184 GNAT2P19087 354 aa22.74■■□□□ 1.23
CLN3-258ENST00000637184 STRIP1Q5VSL9 837 aa22.74■■□□□ 1.23
CLN3-258ENST00000637184 KCNQ5Q9NR82 932 aa22.74■■□□□ 1.23
CLN3-258ENST00000637184 SCN9AQ15858 1988 aa22.74■■□□□ 1.23
CLN3-258ENST00000637184 LDHCP07864 332 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 IARSP41252 1262 aaKnown RBP22.73■■□□□ 1.23
CLN3-258ENST00000637184 RABEP1Q15276 862 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 LCORLQ8N3X6 602 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 SNX14Q9Y5W7 946 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 USP17L3A6NCW0 530 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 USP17L4A6NCW7 530 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 SLC27A2O14975 620 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 APPP05067 770 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 USP17L1Q7RTZ2 530 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 KCNB2Q92953 911 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 CTNNA3Q9UI47 895 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 MYH2Q9UKX2 1941 aa22.73■■□□□ 1.23
CLN3-258ENST00000637184 FOXP2O15409 715 aa22.72■■□□□ 1.23
CLN3-258ENST00000637184 FKBP1AP62942 108 aaKnown RBP22.72■■□□□ 1.23
CLN3-258ENST00000637184 SLF2Q8IX21 1173 aa22.72■■□□□ 1.23
CLN3-258ENST00000637184 RASEFQ8IZ41 740 aa22.72■■□□□ 1.23
CLN3-258ENST00000637184 CERS5Q8N5B7 392 aa22.72■■□□□ 1.23
CLN3-258ENST00000637184 IL17RAQ96F46 866 aa22.72■■□□□ 1.23
CLN3-258ENST00000637184 RIOK1Q9BRS2 568 aaKnown RBP22.72■■□□□ 1.23
CLN3-258ENST00000637184 PATL2C9JE40 543 aaKnown RBP22.71■■□□□ 1.23
CLN3-258ENST00000637184 NFKBIEO00221 500 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 DIXDC1Q155Q3 683 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 NIM1KQ8IY84 436 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 SYT17Q9BSW7 474 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 FGAP02671 866 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 DACT2Q5SW24 774 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 NOL10Q9BSC4 688 aaKnown RBP22.71■■□□□ 1.23
CLN3-258ENST00000637184 MXD3Q9BW11 206 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 AATFQ9NY61 560 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-258ENST00000637184 SLC4A4Q9Y6R1 1079 aa22.71■■□□□ 1.23
CLN3-258ENST00000637184 LTBP3Q9NS15 1303 aa22.7■■□□□ 1.22
CLN3-258ENST00000637184 YDJCA8MPS7 323 aa22.7■■□□□ 1.22
CLN3-258ENST00000637184 DYNLL1P63167 89 aaKnown RBP22.7■■□□□ 1.22
CLN3-258ENST00000637184 MROH7-TTC4A0A0A0MT08 1334 aa22.69■■□□□ 1.22
CLN3-258ENST00000637184 CYP21A2P08686 494 aa22.69■■□□□ 1.22
CLN3-258ENST00000637184 IPO9Q96P70 1041 aaKnown RBP22.69■■□□□ 1.22
CLN3-258ENST00000637184 NACAP1Q9BZK3 213 aa22.69■■□□□ 1.22
CLN3-258ENST00000637184 TTF2Q9UNY4 1162 aaKnown RBP22.69■■□□□ 1.22
CLN3-258ENST00000637184 PSME4Q14997 1843 aa22.69■■□□□ 1.22
CLN3-258ENST00000637184 RPAP1Q9BWH6 1393 aaPredicted RBP22.69■■□□□ 1.22
CLN3-258ENST00000637184 COL4A5P29400 1685 aa22.69■■□□□ 1.22
CLN3-258ENST00000637184 F8W031 263 aaPredicted RBP22.68■■□□□ 1.22
CLN3-258ENST00000637184 BAG3O95817 575 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 FAM163AQ96GL9 167 aaPredicted RBP22.68■■□□□ 1.22
CLN3-258ENST00000637184 ZNRF3Q9ULT6 936 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 ZNF646O15015 1829 aaPredicted RBP22.68■■□□□ 1.22
CLN3-258ENST00000637184 GSG1L2A8MUP6 293 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 PRKAB2O43741 272 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 ALX1Q15699 326 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 TSGA10IPQ3SY00 556 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 IFNL3Q8IZI9 196 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 JDP2Q8WYK2 163 aa22.68■■□□□ 1.22
CLN3-258ENST00000637184 BECN1Q14457 450 aa22.67■■□□□ 1.22
CLN3-258ENST00000637184 KRT32Q14532 448 aa22.67■■□□□ 1.22
CLN3-258ENST00000637184 IMMTQ16891 758 aaKnown RBP22.67■■□□□ 1.22
CLN3-258ENST00000637184 CRNKL1Q9BZJ0 848 aaKnown RBP22.67■■□□□ 1.22
CLN3-258ENST00000637184 NAPBQ9H115 298 aa22.67■■□□□ 1.22
CLN3-258ENST00000637184 ZMYM6O95789 1325 aa22.66■■□□□ 1.22
CLN3-258ENST00000637184 PPP4CP60510 307 aa22.66■■□□□ 1.22
CLN3-258ENST00000637184 CERS3Q8IU89 383 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms