RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SOS1Q07889 1333 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-213ENST00000636759 MAP3K19Q56UN5 1328 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 MTA1Q13330 715 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 CEP57L1Q8IYX8 460 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 SPATA32Q96LK8 384 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 SCAND2PQ9GZW5 306 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-213ENST00000636759 KIF9Q9HAQ2 790 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 RPS6KL1Q9Y6S9 549 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 ALS2Q96Q42 1657 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 NPHP3Q7Z494 1330 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 LAMA4Q16363 1823 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 CRACR2AQ9BSW2 395 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 API5Q9BZZ5 524 aaKnown RBP7.83□□□□□ -1.16
SCN1A-213ENST00000636759 OSBPL5Q9H0X9 879 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-213ENST00000636759 IL25Q9H293 177 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 C5P01031 1676 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 IGSF1Q8N6C5 1336 aa7.83□□□□□ -1.16
SCN1A-213ENST00000636759 GLI3P10071 1580 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 RPS6KA3P51812 740 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 CCT2P78371 535 aaKnown RBP7.82□□□□□ -1.16
SCN1A-213ENST00000636759 HSP90AB2PQ58FF8 381 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 TTC6Q86TZ1 520 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 RSRC1Q96IZ7 334 aaKnown RBP7.82□□□□□ -1.16
SCN1A-213ENST00000636759 MEIS3Q99687 375 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 PRDM16Q9HAZ2 1276 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 PARP3Q9Y6F1 533 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 NCAPD2Q15021 1401 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 RNF40O75150 1001 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 NFXL1Q6ZNB6 911 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 MSL3Q8N5Y2 521 aaKnown RBP7.82□□□□□ -1.16
SCN1A-213ENST00000636759 HNRNPLLQ8WVV9 542 aaKnown RBP7.82□□□□□ -1.16
SCN1A-213ENST00000636759 ZBTB10Q96DT7 871 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 PALD1Q9ULE6 856 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.82□□□□□ -1.16
SCN1A-213ENST00000636759 GOLGA6L9A6NEM1 432 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 PRPHP41219 470 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 ARHGAP25P42331 645 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 CHMP4BP1P59074 171 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 B4GALNT4Q76KP1 1039 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 TRIM74Q86UV6 250 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 TRIM73Q86UV7 250 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 BCAS4Q8TDM0 211 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 MICAL1Q8TDZ2 1067 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 KCNB2Q92953 911 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 SPDL1Q96EA4 605 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 ANO10Q9NW15 660 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 CHCHD3Q9NX63 227 aaKnown RBP7.82□□□□□ -1.16
SCN1A-213ENST00000636759 ANAPC4Q9UJX5 808 aa7.82□□□□□ -1.16
SCN1A-213ENST00000636759 NUTM2FA1L443 756 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 MYO1FO00160 1098 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 GNAI3P08754 354 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 GJB2P29033 226 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 CASP8Q14790 479 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 BEND6Q5SZJ8 279 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-213ENST00000636759 MICALCLQ6ZW33 695 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 RPAP2Q8IXW5 612 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-213ENST00000636759 LIMCH1Q9UPQ0 1083 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 LMTK3Q96Q04 1460 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 WDHD1O75717 1129 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-213ENST00000636759 PSME1Q06323 249 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 ACTN3Q08043 901 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-213ENST00000636759 RSRC2Q7L4I2 434 aaKnown RBP7.81□□□□□ -1.16
SCN1A-213ENST00000636759 G2E3Q7L622 706 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 FERMT3Q86UX7 667 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 PARD3BQ8TEW8 1205 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 CCDC97Q96F63 343 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-213ENST00000636759 ESYT1Q9BSJ8 1104 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 LRRCC1Q9C099 1032 aa7.81□□□□□ -1.16
SCN1A-213ENST00000636759 COQ9O75208 318 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 SKAP2O75563 359 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-213ENST00000636759 PECAM1P16284 738 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-213ENST00000636759 CCDC50Q8IVM0 306 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 AMOTL1Q8IY63 956 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 FAM76AQ8TAV0 307 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 MTMR6Q9Y217 621 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 MRC1P22897 1456 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 XIRP1Q702N8 1843 aaKnown RBP7.8□□□□□ -1.16
SCN1A-213ENST00000636759 ELL2O00472 640 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-213ENST00000636759 TUBBP07437 444 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 TUBB4BP68371 445 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 IQCB1Q15051 598 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 SULT6B1Q6IMI4 303 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 ABCB6Q9NP58 842 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 KLC4Q9NSK0 619 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 EME2A4GXA9 379 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-213ENST00000636759 ENO4A6NNW6 628 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 MAP3K9P80192 1104 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 LARP1BQ659C4 914 aaKnown RBP7.8□□□□□ -1.16
SCN1A-213ENST00000636759 AOPEPQ8N6M6 819 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 NUP133Q8WUM0 1156 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 RILPL2Q969X0 211 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 CLIC6Q96NY7 704 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 STAP2Q9UGK3 403 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 L1RE1Q9UN81 338 aa7.8□□□□□ -1.16
SCN1A-213ENST00000636759 GOLGA6L7A0A1B0GV03 622 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 MAFGO15525 162 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 PDCP20941 246 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 SNCBQ16143 134 aa7.79□□□□□ -1.16
SCN1A-213ENST00000636759 RNF187Q5TA31 235 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-213ENST00000636759 C11orf57Q6ZUT1 292 aaPredicted RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms