RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 RAI14Q9P0K7 980 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 SUGT1Q9Y2Z0 365 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 ECE2O60344 883 aa16.96■□□□□ 0.31
CLN3-242ENST00000635958 PRDX5P30044 214 aa16.96■□□□□ 0.31
CLN3-242ENST00000635958 FKBP1AP62942 108 aaKnown RBP16.96■□□□□ 0.31
CLN3-242ENST00000635958 KIAA1211Q6ZU35 1233 aa16.96■□□□□ 0.31
CLN3-242ENST00000635958 PUS7LQ9H0K6 701 aaKnown RBP16.96■□□□□ 0.31
CLN3-242ENST00000635958 ZNF277Q9NRM2 450 aaPredicted RBP16.96■□□□□ 0.31
CLN3-242ENST00000635958 MAST3O60307 1309 aa16.96■□□□□ 0.31
CLN3-242ENST00000635958 LDHBP07195 334 aaKnown RBP16.96■□□□□ 0.3
CLN3-242ENST00000635958 MECOMQ03112 1051 aa16.96■□□□□ 0.3
CLN3-242ENST00000635958 STRIP1Q5VSL9 837 aa16.96■□□□□ 0.3
CLN3-242ENST00000635958 MAP4K1Q92918 833 aa16.96■□□□□ 0.3
CLN3-242ENST00000635958 JAG2Q9Y219 1238 aa16.96■□□□□ 0.3
CLN3-242ENST00000635958 CCDC171Q6TFL3 1326 aa16.95■□□□□ 0.3
CLN3-242ENST00000635958 M0R2C6 588 aa16.95■□□□□ 0.3
CLN3-242ENST00000635958 IARSP41252 1262 aaKnown RBP16.95■□□□□ 0.3
CLN3-242ENST00000635958 MFSD14BQ5SR56 506 aa16.95■□□□□ 0.3
CLN3-242ENST00000635958 LARGE2Q8N3Y3 721 aa16.95■□□□□ 0.3
CLN3-242ENST00000635958 CYP7A1P22680 504 aa16.94■□□□□ 0.3
CLN3-242ENST00000635958 PTH1RQ03431 593 aa16.94■□□□□ 0.3
CLN3-242ENST00000635958 GRIK5Q16478 980 aa16.94■□□□□ 0.3
CLN3-242ENST00000635958 NAA16Q6N069 864 aaPredicted RBP16.94■□□□□ 0.3
CLN3-242ENST00000635958 YDJCA8MPS7 323 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 SLC4A3P48751 1232 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 DACT2Q5SW24 774 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 CCDC129Q6ZRS4 1044 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 KCNQ5Q9NR82 932 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 CCDC88AQ3V6T2 1871 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 SCN9AQ15858 1988 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 USP17L3A6NCW0 530 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 USP17L4A6NCW7 530 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 GPAA1O43292 621 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 USP17L1Q7RTZ2 530 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 CERS5Q8N5B7 392 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 FAM163AQ96GL9 167 aaPredicted RBP16.93■□□□□ 0.3
CLN3-242ENST00000635958 STRBPQ96SI9 672 aaKnown RBP16.93■□□□□ 0.3
CLN3-242ENST00000635958 DSCC1Q9BVC3 393 aa16.93■□□□□ 0.3
CLN3-242ENST00000635958 GSTO1P78417 241 aa16.92■□□□□ 0.3
CLN3-242ENST00000635958 ADGRA1Q86SQ6 560 aa16.92■□□□□ 0.3
CLN3-242ENST00000635958 IL17RAQ96F46 866 aa16.92■□□□□ 0.3
CLN3-242ENST00000635958 ZNRF3Q9ULT6 936 aa16.92■□□□□ 0.3
CLN3-242ENST00000635958 COL4A5P29400 1685 aa16.92■□□□□ 0.3
CLN3-242ENST00000635958 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 LDHCP07864 332 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 HSPD1P10809 573 aaKnown RBP16.91■□□□□ 0.3
CLN3-242ENST00000635958 HSPA4P34932 840 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 NECTIN1Q15223 517 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 DZIP1Q86YF9 867 aaKnown RBP16.91■□□□□ 0.3
CLN3-242ENST00000635958 MRIQ9BWK5 157 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 UTRNP46939 3433 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 ZNF646O15015 1829 aaPredicted RBP16.91■□□□□ 0.3
CLN3-242ENST00000635958 NIM1KQ8IY84 436 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 KCNB2Q92953 911 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 AIDAQ96BJ3 306 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 RIOK1Q9BRS2 568 aaKnown RBP16.91■□□□□ 0.3
CLN3-242ENST00000635958 MAST2Q6P0Q8 1798 aa16.91■□□□□ 0.3
CLN3-242ENST00000635958 FOXP2O15409 715 aa16.9■□□□□ 0.3
CLN3-242ENST00000635958 VIL1P09327 827 aaKnown RBP16.9■□□□□ 0.3
CLN3-242ENST00000635958 ANAPC15P60006 121 aa16.9■□□□□ 0.3
CLN3-242ENST00000635958 PPP4CP60510 307 aa16.9■□□□□ 0.3
CLN3-242ENST00000635958 VPS53Q5VIR6 699 aa16.9■□□□□ 0.3
CLN3-242ENST00000635958 SLF2Q8IX21 1173 aa16.9■□□□□ 0.3
CLN3-242ENST00000635958 PSME4Q14997 1843 aa16.9■□□□□ 0.3
CLN3-242ENST00000635958 MAGEB6P1A0A0J9YX57 407 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 MBD4O95243 580 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 GNAT2P19087 354 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 MCCP23508 829 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 PRELPP51888 382 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 L1TD1Q5T7N2 865 aaKnown RBP16.89■□□□□ 0.29
CLN3-242ENST00000635958 JDP2Q8WYK2 163 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 KIF2CQ99661 725 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 RBM8AQ9Y5S9 174 aaKnown RBP16.89■□□□□ 0.29
CLN3-242ENST00000635958 U3KPZ7 1027 aaPredicted RBP16.89■□□□□ 0.29
CLN3-242ENST00000635958 RPAP1Q9BWH6 1393 aaPredicted RBP16.89■□□□□ 0.29
CLN3-242ENST00000635958 GAKO14976 1311 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 ALX1Q15699 326 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 FBXW7Q969H0 707 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 MXD3Q9BW11 206 aa16.89■□□□□ 0.29
CLN3-242ENST00000635958 MROH7-TTC4A0A0A0MT08 1334 aa16.88■□□□□ 0.29
CLN3-242ENST00000635958 PATL2C9JE40 543 aaKnown RBP16.88■□□□□ 0.29
CLN3-242ENST00000635958 HDLBPQ00341 1268 aaKnown RBP16.88■□□□□ 0.29
CLN3-242ENST00000635958 RASSF7Q02833 373 aa16.88■□□□□ 0.29
CLN3-242ENST00000635958 CERS3Q8IU89 383 aa16.88■□□□□ 0.29
CLN3-242ENST00000635958 LCORLQ8N3X6 602 aa16.88■□□□□ 0.29
CLN3-242ENST00000635958 MIGA1Q8NAN2 632 aa16.88■□□□□ 0.29
CLN3-242ENST00000635958 ARMT1Q9H993 441 aa16.88■□□□□ 0.29
CLN3-242ENST00000635958 MYO3BQ8WXR4 1341 aa16.87■□□□□ 0.29
CLN3-242ENST00000635958 GPR75-ASB3A0A0A6YYF3 556 aa16.87■□□□□ 0.29
CLN3-242ENST00000635958 DIXDC1Q155Q3 683 aa16.87■□□□□ 0.29
CLN3-242ENST00000635958 HHIPL2Q6UWX4 724 aa16.87■□□□□ 0.29
CLN3-242ENST00000635958 ARHGAP27Q6ZUM4 889 aa16.87■□□□□ 0.29
CLN3-242ENST00000635958 GMLQ99445 158 aa16.87■□□□□ 0.29
CLN3-242ENST00000635958 TTF2Q9UNY4 1162 aaKnown RBP16.87■□□□□ 0.29
CLN3-242ENST00000635958 MYH2Q9UKX2 1941 aa16.87■□□□□ 0.29
CLN3-242ENST00000635958 YBX3P16989 372 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLN3-242ENST00000635958 CXCL9Q07325 125 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 TSGA10IPQ3SY00 556 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 RSBN1LQ6PCB5 846 aaPredicted RBP16.86■□□□□ 0.29
CLN3-242ENST00000635958 ZMYM6O95789 1325 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms