RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	GRM1	Q13255	1194 aa		11.5	□□□□□ -0.57
PDLIM5-223	ENST00000627587	ATP2B3	Q16720	1220 aa		11.5	□□□□□ -0.57
PDLIM5-223	ENST00000627587	WASHC4	Q2M389	1173 aa		11.5	□□□□□ -0.57
PDLIM5-223	ENST00000627587	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-223	ENST00000627587	TAF5L	O75529	589 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	RGS19	P49795	217 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	HIRA	P54198	1017 aa	Predicted RBP	11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	SLC51A	Q86UW1	340 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	MPHOSPH8	Q99549	860 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	AOC2	O75106	756 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	REC8	O95072	547 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	IGHMBP2	P38935	993 aa	Known RBP	11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	CHRND	Q07001	517 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	NOG	Q13253	232 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	CWC27	Q6UX04	472 aa	Known RBP	11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	REM2	Q8IYK8	340 aa	Predicted RBP	11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	FAM227B	Q96M60	508 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	CDC5L	Q99459	802 aa	Known RBP	11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	SNRK	Q9NRH2	765 aa		11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.49	□□□□□ -0.57
PDLIM5-223	ENST00000627587		A0A0D9SFI3	127 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	SLC4A3	P48751	1232 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	PUM3	Q15397	648 aa	Known RBP	11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	PI16	Q6UXB8	463 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	USP48	Q86UV5	1035 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	MICALL2	Q8IY33	904 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	DNAJC2	Q99543	621 aa	Known RBP	11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	LSG1	Q9H089	658 aa	Known RBP	11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	ANTXR1	Q9H6X2	564 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	BSDC1	Q9NW68	430 aa	Predicted RBP	11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	RFX7	Q2KHR2	1363 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	MED23	Q9ULK4	1368 aa		11.48	□□□□□ -0.57
PDLIM5-223	ENST00000627587	LRRC37A	A6NMS7	1700 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	CCDC85C	A6NKD9	419 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	YDJC	A8MPS7	323 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	MCAM	P43121	646 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	MLLT1	Q03111	559 aa	Predicted RBP	11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	NMI	Q13287	307 aa	Predicted RBP	11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	ANKRD18A	Q8IVF6	992 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	C2orf69	Q8N8R5	385 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	LPIN2	Q92539	896 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	CCDC102A	Q96A19	550 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	DCPS	Q96C86	337 aa	Known RBP	11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	MYH13	Q9UKX3	1938 aa		11.47	□□□□□ -0.57
PDLIM5-223	ENST00000627587	C6orf229	H3BNL8	230 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	CD2BP2	O95400	341 aa	Known RBP	11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	IFIT1	P09914	478 aa	Known RBP	11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	PHKA1	P46020	1223 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	RPS8	P62241	208 aa	Known RBP	11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	SLFNL1	Q499Z3	407 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	CCDC158	Q5M9N0	1113 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	GORAB	Q5T7V8	394 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	KBTBD3	Q8NAB2	608 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	TRPM4	Q8TD43	1214 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	SP7	Q8TDD2	431 aa	Predicted RBP	11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	FSD1	Q9BTV5	496 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	TBC1D2	Q9BYX2	928 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	ZNF408	Q9H9D4	720 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	PAG1	Q9NWQ8	432 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	PALD1	Q9ULE6	856 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	MINPP1	Q9UNW1	487 aa		11.46	□□□□□ -0.57
PDLIM5-223	ENST00000627587	HIP1	O00291	1037 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	GOLIM4	O00461	696 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	PSMD14	O00487	310 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ARID4A	P29374	1257 aa	Predicted RBP	11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	HUNK	P57058	714 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	CCDC102B	Q68D86	513 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	IL17RA	Q96F46	866 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ANO2	Q9NQ90	1003 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	DIAPH3	Q9NSV4	1193 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	RAD50	Q92878	1312 aa		11.46	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ZAP70	P43403	619 aa		11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587	PTH1R	Q03431	593 aa		11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587	TTC39A	Q5SRH9	613 aa		11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587	RGMB	Q6NW40	437 aa		11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587	KRT26	Q7Z3Y9	468 aa		11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587	RUFY2	Q8WXA3	655 aa		11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587	PODXL2	Q9NZ53	605 aa		11.45	□□□□□ -0.58
PDLIM5-223	ENST00000627587		G3V3G9	751 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	RIMBP2	O15034	1052 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	EPB41L2	O43491	1005 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	ECE2	O60344	883 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	COL1A1	P02452	1464 aa	Predicted RBP	11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	VIL1	P09327	827 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	GPSM2	P81274	684 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	DCAF8	Q5TAQ9	597 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SEC62	Q99442	399 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	MCOLN1	Q9GZU1	580 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	DBNDD1	Q9H9R9	158 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	GBA2	Q9HCG7	927 aa	Predicted RBP	11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	SAGE1	Q9NXZ1	904 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	DAXX	Q9UER7	740 aa	Predicted RBP	11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	POLL	Q9UGP5	575 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	IRS2	Q9Y4H2	1338 aa		11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	CYP2E1	P05181	493 aa	Predicted RBP	11.44	□□□□□ -0.58
PDLIM5-223	ENST00000627587	HSPA4	P34932	840 aa		11.44	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 49 ms