RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TMEM88BA6NKF7 163 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 ADH5P11766 374 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 ADMP35318 185 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 VSIG10LQ86VR7 867 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 TP53INP2Q8IXH6 220 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 FBXL18Q96ME1 805 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 ANO2Q9NQ90 1003 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 CCDC87Q9NVE4 849 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 PRKAG2Q9UGJ0 569 aa6.26□□□□□ -1.41
SCN1A-208ENST00000625916 A0A096LPE4 126 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 A0A1W2PPZ6 126 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 CYP11A1P05108 521 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 RAB6AP20340 208 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 MAOBP27338 520 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 PCDH1Q08174 1060 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 HP1BP3Q5SSJ5 553 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-208ENST00000625916 ZAR1Q86SH2 424 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 GJD3Q8N144 294 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 EZH1Q92800 747 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-208ENST00000625916 CLEC4MQ9H2X3 399 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-208ENST00000625916 RAD18Q9NS91 495 aa6.25□□□□□ -1.41
SCN1A-208ENST00000625916 FAM170BA6NMN3 283 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 PRNPP04156 253 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 ZNF211Q13398 564 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-208ENST00000625916 MAP7Q14244 749 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 POU4F3Q15319 338 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 DUSP27Q5VZP5 1158 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 DYMQ7RTS9 669 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 DDX54Q8TDD1 881 aaKnown RBP6.24□□□□□ -1.41
SCN1A-208ENST00000625916 LIN7BQ9HAP6 207 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 BSDC1Q9NW68 430 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-208ENST00000625916 ACTL7BQ9Y614 415 aa6.24□□□□□ -1.41
SCN1A-208ENST00000625916 A0A1W2PP55 124 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 PPP1R15AO75807 674 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-208ENST00000625916 NFICP08651 508 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 ZNF423Q2M1K9 1284 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 SPRED3Q2MJR0 410 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 AKAP4Q5JQC9 854 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 CCNJLQ8IV13 435 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 CCDC82Q8N4S0 544 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 CORO1BQ9BR76 489 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 NRSN2Q9GZP1 204 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 ZFYVE1Q9HBF4 777 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 LRRC4CQ9HCJ2 640 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 AP4E1Q9UPM8 1137 aa6.23□□□□□ -1.41
SCN1A-208ENST00000625916 GRIA4P48058 902 aa6.22□□□□□ -1.41
SCN1A-208ENST00000625916 CYP27A1Q02318 531 aa6.22□□□□□ -1.41
SCN1A-208ENST00000625916 GALNT12Q8IXK2 581 aa6.22□□□□□ -1.41
SCN1A-208ENST00000625916 FLCNQ8NFG4 579 aa6.22□□□□□ -1.41
SCN1A-208ENST00000625916 CTSBP07858 339 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 ASPAP45381 313 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 AGBL5Q8NDL9 886 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 GATA6Q92908 595 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 ASIC4Q96FT7 647 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 TCF12Q99081 682 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 SEMA6CQ9H3T2 930 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 BRPF3Q9ULD4 1205 aa6.21□□□□□ -1.42
SCN1A-208ENST00000625916 KRTAP4-8A0A0G2JLE6 195 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-208ENST00000625916 CARNS1A5YM72 827 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 NEFLP07196 543 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 PDE3AQ14432 1141 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 PHLDB3Q6NSJ2 640 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 NFXL1Q6ZNB6 911 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 ZNF765Q7L2R6 523 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 FAM105AQ9NUU6 356 aa6.2□□□□□ -1.42
SCN1A-208ENST00000625916 ECEL1O95672 775 aa6.19□□□□□ -1.42
SCN1A-208ENST00000625916 CBLL1Q75N03 491 aa6.19□□□□□ -1.42
SCN1A-208ENST00000625916 EHD4Q9H223 541 aa6.19□□□□□ -1.42
SCN1A-208ENST00000625916 ACSS3Q9H6R3 686 aa6.19□□□□□ -1.42
SCN1A-208ENST00000625916 LGR6Q9HBX8 967 aa6.19□□□□□ -1.42
SCN1A-208ENST00000625916 ZC3H7BQ9UGR2 993 aaKnown RBP6.19□□□□□ -1.42
SCN1A-208ENST00000625916 DAGLAQ9Y4D2 1042 aa6.19□□□□□ -1.42
SCN1A-208ENST00000625916 B3GALT4O96024 378 aa6.18□□□□□ -1.42
SCN1A-208ENST00000625916 FZD5Q13467 585 aa6.18□□□□□ -1.42
SCN1A-208ENST00000625916 KIAA0319Q5VV43 1072 aa6.18□□□□□ -1.42
SCN1A-208ENST00000625916 USPL1Q5W0Q7 1092 aa6.18□□□□□ -1.42
SCN1A-208ENST00000625916 OGFOD2Q6N063 350 aa6.18□□□□□ -1.42
SCN1A-208ENST00000625916 TRIM56Q9BRZ2 755 aaKnown RBP6.18□□□□□ -1.42
SCN1A-208ENST00000625916 PAK6Q9NQU5 681 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-208ENST00000625916 H3BRB1 525 aa6.17□□□□□ -1.42
SCN1A-208ENST00000625916 ICMTO60725 284 aa6.17□□□□□ -1.42
SCN1A-208ENST00000625916 AOC2O75106 756 aa6.17□□□□□ -1.42
SCN1A-208ENST00000625916 JUNBP17275 347 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-208ENST00000625916 GLYCTKQ8IVS8 523 aa6.17□□□□□ -1.42
SCN1A-208ENST00000625916 ZNF576Q9H609 170 aa6.17□□□□□ -1.42
SCN1A-208ENST00000625916 TUT1Q9H6E5 874 aaKnown RBP6.17□□□□□ -1.42
SCN1A-208ENST00000625916 DYNC1LI2O43237 492 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-208ENST00000625916 NDUFB5O43674 189 aa6.16□□□□□ -1.42
SCN1A-208ENST00000625916 COL19A1Q14993 1142 aa6.16□□□□□ -1.42
SCN1A-208ENST00000625916 B4GALNT3Q6L9W6 998 aa6.16□□□□□ -1.42
SCN1A-208ENST00000625916 OGFOD3Q6PK18 319 aa6.16□□□□□ -1.42
SCN1A-208ENST00000625916 NPHS2Q9NP85 383 aa6.16□□□□□ -1.42
SCN1A-208ENST00000625916 EGFL7Q9UHF1 273 aa6.16□□□□□ -1.42
SCN1A-208ENST00000625916 SLC5A6Q9Y289 635 aa6.16□□□□□ -1.42
SCN1A-208ENST00000625916 CPNE3O75131 537 aaKnown RBP6.15□□□□□ -1.42
SCN1A-208ENST00000625916 ITGB5P18084 799 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 ITPKAP23677 461 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 AP3B2Q13367 1082 aa6.15□□□□□ -1.42
SCN1A-208ENST00000625916 PDE3BQ13370 1112 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms