RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ARMC9Q7Z3E5 817 aa15.65■□□□□ 0.1
PNKP-217ENST00000625216 ZBTB40Q9NUA8 1239 aa15.65■□□□□ 0.1
PNKP-217ENST00000625216 SCAF8Q9UPN6 1271 aaKnown RBP15.65■□□□□ 0.1
PNKP-217ENST00000625216 POLR2AP24928 1970 aaKnown RBP15.65■□□□□ 0.1
PNKP-217ENST00000625216 COL1A1P02452 1464 aaPredicted RBP15.65■□□□□ 0.1
PNKP-217ENST00000625216 THSD7BQ9C0I4 1608 aa15.65■□□□□ 0.1
PNKP-217ENST00000625216 GNAI2P04899 355 aa15.64■□□□□ 0.09
PNKP-217ENST00000625216 KIF23Q02241 960 aaPredicted RBP15.64■□□□□ 0.09
PNKP-217ENST00000625216 CHAF1AQ13111 956 aaPredicted RBP15.64■□□□□ 0.09
PNKP-217ENST00000625216 AAMPQ13685 434 aa15.64■□□□□ 0.09
PNKP-217ENST00000625216 TTLL12Q14166 644 aaPredicted RBP15.64■□□□□ 0.09
PNKP-217ENST00000625216 SUPT20HL1Q3ZLR7 823 aa15.64■□□□□ 0.09
PNKP-217ENST00000625216 SIL1Q9H173 461 aa15.64■□□□□ 0.09
PNKP-217ENST00000625216 PCDHB15Q9Y5E8 787 aa15.64■□□□□ 0.09
PNKP-217ENST00000625216 ZNF646O15015 1829 aaPredicted RBP15.64■□□□□ 0.09
PNKP-217ENST00000625216 A0A1B0GUL6 1792 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 UBE2Q2LH0YL09 131 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 ZBTB22O15209 634 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 SRGAP3O43295 1099 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 TNFAIP1Q13829 316 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 ATP2B3Q16720 1220 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 WDR66Q8TBY9 1149 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 ZIC5Q96T25 663 aa15.63■□□□□ 0.09
PNKP-217ENST00000625216 GNL3LQ9NVN8 582 aaKnown RBP15.63■□□□□ 0.09
PNKP-217ENST00000625216 IQSEC3Q9UPP2 1182 aaPredicted RBP15.63■□□□□ 0.09
PNKP-217ENST00000625216 CLRN2A0PK11 232 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 UNCXA6NJT0 531 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 PPP1R12BO60237 982 aaPredicted RBP15.62■□□□□ 0.09
PNKP-217ENST00000625216 CRKP46108 304 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 RASAL3Q86YV0 1011 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 C1orf115Q9H7X2 142 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 SAGE1Q9NXZ1 904 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 PA2G4Q9UQ80 394 aaKnown RBP15.62■□□□□ 0.09
PNKP-217ENST00000625216 PCDHAC2Q9Y5I4 1007 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 MAST3O60307 1309 aa15.62■□□□□ 0.09
PNKP-217ENST00000625216 SEMA3EO15041 775 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 SPDYE2Q495Y8 402 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 LDLRAD1Q5T700 205 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 MOB2Q70IA6 237 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 TEKT1Q969V4 418 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 CSRNP1Q96S65 589 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 VEZTQ9HBM0 779 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 ZNF70Q9UC06 446 aaPredicted RBP15.61■□□□□ 0.09
PNKP-217ENST00000625216 AKAP2Q9Y2D5 859 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 PAPPA2Q9BXP8 1791 aa15.61■□□□□ 0.09
PNKP-217ENST00000625216 TNNI2P48788 182 aa15.6■□□□□ 0.09
PNKP-217ENST00000625216 RASA3Q14644 834 aa15.6■□□□□ 0.09
PNKP-217ENST00000625216 MAP3K11Q16584 847 aa15.6■□□□□ 0.09
PNKP-217ENST00000625216 TDRD3Q9H7E2 651 aaKnown RBP15.6■□□□□ 0.09
PNKP-217ENST00000625216 GRIK5Q16478 980 aa15.59■□□□□ 0.09
PNKP-217ENST00000625216 HHIPL2Q6UWX4 724 aa15.59■□□□□ 0.09
PNKP-217ENST00000625216 ZDHHC15Q96MV8 337 aa15.59■□□□□ 0.09
PNKP-217ENST00000625216 CHMP4BQ9H444 224 aaKnown RBP15.59■□□□□ 0.09
PNKP-217ENST00000625216 DENND2AQ9ULE3 1009 aa15.59■□□□□ 0.09
PNKP-217ENST00000625216 ANGEL1Q9UNK9 670 aaKnown RBP15.59■□□□□ 0.09
PNKP-217ENST00000625216 IGHDP01880 384 aa15.58■□□□□ 0.08
PNKP-217ENST00000625216 PRKG1Q13976 671 aa15.58■□□□□ 0.08
PNKP-217ENST00000625216 FKBP1CQ5VVH2 108 aa15.58■□□□□ 0.08
PNKP-217ENST00000625216 RNF186Q9NXI6 227 aa15.58■□□□□ 0.08
PNKP-217ENST00000625216 IREB2P48200 963 aaKnown RBP15.57■□□□□ 0.08
PNKP-217ENST00000625216 G3BP1Q13283 466 aaKnown RBP eCLIP15.57■□□□□ 0.08
PNKP-217ENST00000625216 NBPF12Q5TAG4 269 aaPredicted RBP15.57■□□□□ 0.08
PNKP-217ENST00000625216 SLC10A4Q96EP9 437 aa15.57■□□□□ 0.08
PNKP-217ENST00000625216 TMOD2Q9NZR1 351 aa15.57■□□□□ 0.08
PNKP-217ENST00000625216 TSKSQ9UJT2 592 aa15.57■□□□□ 0.08
PNKP-217ENST00000625216 AOX1Q06278 1338 aa15.57■□□□□ 0.08
PNKP-217ENST00000625216 SALL1Q9NSC2 1324 aa15.57■□□□□ 0.08
PNKP-217ENST00000625216 A0A1B0GUL7 405 aa15.56■□□□□ 0.08
PNKP-217ENST00000625216 PHKA1P46020 1223 aa15.56■□□□□ 0.08
PNKP-217ENST00000625216 TM4SF4P48230 202 aa15.56■□□□□ 0.08
PNKP-217ENST00000625216 INHBEP58166 350 aa15.56■□□□□ 0.08
PNKP-217ENST00000625216 TIMM10P62072 90 aa15.56■□□□□ 0.08
PNKP-217ENST00000625216 TFCP2Q12800 502 aa15.56■□□□□ 0.08
PNKP-217ENST00000625216 CCDC102BQ68D86 513 aa15.56■□□□□ 0.08
PNKP-217ENST00000625216 APOBEC3HQ6NTF7 200 aaKnown RBP15.56■□□□□ 0.08
PNKP-217ENST00000625216 ZGPATQ8N5A5 531 aaKnown RBP15.56■□□□□ 0.08
PNKP-217ENST00000625216 PDS5AQ29RF7 1337 aaKnown RBP15.55■□□□□ 0.08
PNKP-217ENST00000625216 PNMA6EA0A0J9YXQ4 647 aa15.55■□□□□ 0.08
PNKP-217ENST00000625216 TCP10L2B9ZVM9 353 aa15.55■□□□□ 0.08
PNKP-217ENST00000625216 USP2O75604 605 aaPredicted RBP15.55■□□□□ 0.08
PNKP-217ENST00000625216 TRPA1O75762 1119 aa15.55■□□□□ 0.08
PNKP-217ENST00000625216 LDHBP07195 334 aaKnown RBP15.55■□□□□ 0.08
PNKP-217ENST00000625216 ATP8B2P98198 1209 aa15.55■□□□□ 0.08
PNKP-217ENST00000625216 SREBF2Q12772 1141 aa15.55■□□□□ 0.08
PNKP-217ENST00000625216 SPRYD7Q5W111 196 aa15.55■□□□□ 0.08
PNKP-217ENST00000625216 CENPQQ7L2Z9 268 aaPredicted RBP15.55■□□□□ 0.08
PNKP-217ENST00000625216 FAM83AQ86UY5 434 aa15.55■□□□□ 0.08
PNKP-217ENST00000625216 ZBTB48P10074 688 aaPredicted RBP15.54■□□□□ 0.08
PNKP-217ENST00000625216 ADORA1P30542 326 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 HDAC1Q13547 482 aaPredicted RBP15.54■□□□□ 0.08
PNKP-217ENST00000625216 POLA2Q14181 598 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 CEP85Q6P2H3 762 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 SIRT2Q8IXJ6 389 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 ANKRD13AQ8IZ07 590 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 SSH3Q8TE77 659 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 HOOK2Q96ED9 719 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 XAGE2Q96GT9 111 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 TEPSINQ96N21 525 aa15.54■□□□□ 0.08
PNKP-217ENST00000625216 SPTY2D1Q68D10 685 aaPredicted RBP15.53■□□□□ 0.08
PNKP-217ENST00000625216 NEUROD6Q96NK8 337 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms