RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 DZIP1LQ8IYY4 767 aaKnown RBP18.39■□□□□ 0.53
LINC00643-206ENST00000623985 DEFB129Q9H1M3 183 aa18.39■□□□□ 0.53
LINC00643-206ENST00000623985 FOCADQ5VW36 1801 aa18.38■□□□□ 0.53
LINC00643-206ENST00000623985 CLRN2A0PK11 232 aa18.38■□□□□ 0.53
LINC00643-206ENST00000623985 TNFAIP1Q13829 316 aa18.38■□□□□ 0.53
LINC00643-206ENST00000623985 SPDYE2Q495Y8 402 aa18.38■□□□□ 0.53
LINC00643-206ENST00000623985 RASAL3Q86YV0 1011 aa18.38■□□□□ 0.53
LINC00643-206ENST00000623985 VEZTQ9HBM0 779 aa18.38■□□□□ 0.53
LINC00643-206ENST00000623985 AOX1Q06278 1338 aa18.38■□□□□ 0.53
LINC00643-206ENST00000623985 ZBTB22O15209 634 aa18.37■□□□□ 0.53
LINC00643-206ENST00000623985 LBX1P52954 281 aa18.37■□□□□ 0.53
LINC00643-206ENST00000623985 TTLL12Q14166 644 aaPredicted RBP18.37■□□□□ 0.53
LINC00643-206ENST00000623985 GRIK5Q16478 980 aa18.37■□□□□ 0.53
LINC00643-206ENST00000623985 ITPRIPQ8IWB1 547 aa18.37■□□□□ 0.53
LINC00643-206ENST00000623985 WDR66Q8TBY9 1149 aa18.37■□□□□ 0.53
LINC00643-206ENST00000623985 GNL3LQ9NVN8 582 aaKnown RBP18.37■□□□□ 0.53
LINC00643-206ENST00000623985 PNMA6EA0A0J9YXQ4 647 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 SEMA3EO15041 775 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 RLBP1P12271 317 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 MOB2Q70IA6 237 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 ARMC9Q7Z3E5 817 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 TNS4Q8IZW8 715 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 TEKT1Q969V4 418 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 AKAP2Q9Y2D5 859 aa18.36■□□□□ 0.53
LINC00643-206ENST00000623985 SALL1Q9NSC2 1324 aa18.35■□□□□ 0.53
LINC00643-206ENST00000623985 ZIC5Q96T25 663 aa18.35■□□□□ 0.53
LINC00643-206ENST00000623985 TDRD3Q9H7E2 651 aaKnown RBP18.35■□□□□ 0.53
LINC00643-206ENST00000623985 ZNF70Q9UC06 446 aaPredicted RBP18.35■□□□□ 0.53
LINC00643-206ENST00000623985 PDS5AQ29RF7 1337 aaKnown RBP18.34■□□□□ 0.53
LINC00643-206ENST00000623985 A0A1B0GUL7 405 aa18.34■□□□□ 0.53
LINC00643-206ENST00000623985 UBE2Q2LH0YL09 131 aa18.34■□□□□ 0.53
LINC00643-206ENST00000623985 PHKA1P46020 1223 aa18.34■□□□□ 0.53
LINC00643-206ENST00000623985 TFCP2Q12800 502 aa18.34■□□□□ 0.53
LINC00643-206ENST00000623985 ZDHHC15Q96MV8 337 aa18.34■□□□□ 0.53
LINC00643-206ENST00000623985 MRIQ9BWK5 157 aa18.34■□□□□ 0.53
LINC00643-206ENST00000623985 DENND2AQ9ULE3 1009 aa18.34■□□□□ 0.53
LINC00643-206ENST00000623985 ADORA1P30542 326 aa18.33■□□□□ 0.52
LINC00643-206ENST00000623985 KIF23Q02241 960 aaPredicted RBP18.33■□□□□ 0.52
LINC00643-206ENST00000623985 POLA2Q14181 598 aa18.33■□□□□ 0.52
LINC00643-206ENST00000623985 RASA3Q14644 834 aa18.33■□□□□ 0.52
LINC00643-206ENST00000623985 MAP3K11Q16584 847 aa18.33■□□□□ 0.52
LINC00643-206ENST00000623985 SUPT20HL1Q3ZLR7 823 aa18.33■□□□□ 0.52
LINC00643-206ENST00000623985 CCDC102BQ68D86 513 aa18.33■□□□□ 0.52
LINC00643-206ENST00000623985 REM2Q8IYK8 340 aaPredicted RBP18.33■□□□□ 0.52
LINC00643-206ENST00000623985 ANGEL1Q9UNK9 670 aaKnown RBP18.33■□□□□ 0.52
LINC00643-206ENST00000623985 ATAD5Q96QE3 1844 aa18.33■□□□□ 0.52
LINC00643-206ENST00000623985 RPAP1Q9BWH6 1393 aaPredicted RBP18.32■□□□□ 0.52
LINC00643-206ENST00000623985 PPP1R12BO60237 982 aaPredicted RBP18.32■□□□□ 0.52
LINC00643-206ENST00000623985 TNNI2P48788 182 aa18.32■□□□□ 0.52
LINC00643-206ENST00000623985 MVPQ14764 893 aaKnown RBP18.32■□□□□ 0.52
LINC00643-206ENST00000623985 HHIPL2Q6UWX4 724 aa18.32■□□□□ 0.52
LINC00643-206ENST00000623985 SSH3Q8TE77 659 aa18.32■□□□□ 0.52
LINC00643-206ENST00000623985 SAGE1Q9NXZ1 904 aa18.32■□□□□ 0.52
LINC00643-206ENST00000623985 ZBTB7BO15156 539 aaPredicted RBP18.31■□□□□ 0.52
LINC00643-206ENST00000623985 MS4A1P11836 297 aa18.31■□□□□ 0.52
LINC00643-206ENST00000623985 G3BP1Q13283 466 aaKnown RBP eCLIP18.31■□□□□ 0.52
LINC00643-206ENST00000623985 PRKG1Q13976 671 aa18.31■□□□□ 0.52
LINC00643-206ENST00000623985 LDLRAD1Q5T700 205 aa18.31■□□□□ 0.52
LINC00643-206ENST00000623985 ZGPATQ8N5A5 531 aaKnown RBP18.31■□□□□ 0.52
LINC00643-206ENST00000623985 XAGE2Q96GT9 111 aa18.31■□□□□ 0.52
LINC00643-206ENST00000623985 C1orf115Q9H7X2 142 aa18.31■□□□□ 0.52
LINC00643-206ENST00000623985 TMOD2Q9NZR1 351 aa18.31■□□□□ 0.52
LINC00643-206ENST00000623985 TSKSQ9UJT2 592 aa18.31■□□□□ 0.52
LINC00643-206ENST00000623985 MYH7P12883 1935 aa18.3■□□□□ 0.52
LINC00643-206ENST00000623985 UNCXA6NJT0 531 aa18.3■□□□□ 0.52
LINC00643-206ENST00000623985 LDHBP07195 334 aaKnown RBP18.3■□□□□ 0.52
LINC00643-206ENST00000623985 PRDX5P30044 214 aa18.3■□□□□ 0.52
LINC00643-206ENST00000623985 TIMM10P62072 90 aa18.3■□□□□ 0.52
LINC00643-206ENST00000623985 ATP8B2P98198 1209 aa18.3■□□□□ 0.52
LINC00643-206ENST00000623985 RASGRF1Q13972 1273 aa18.3■□□□□ 0.52
LINC00643-206ENST00000623985 NBPF12Q5TAG4 269 aaPredicted RBP18.3■□□□□ 0.52
LINC00643-206ENST00000623985 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.3■□□□□ 0.52
LINC00643-206ENST00000623985 DOCK1Q14185 1865 aa18.3■□□□□ 0.52
LINC00643-206ENST00000623985 TCP10L2B9ZVM9 353 aa18.29■□□□□ 0.52
LINC00643-206ENST00000623985 APOBEC3HQ6NTF7 200 aaKnown RBP18.29■□□□□ 0.52
LINC00643-206ENST00000623985 PANK1Q8TE04 598 aa18.29■□□□□ 0.52
LINC00643-206ENST00000623985 TEPSINQ96N21 525 aa18.29■□□□□ 0.52
LINC00643-206ENST00000623985 CSRNP1Q96S65 589 aa18.29■□□□□ 0.52
LINC00643-206ENST00000623985 FZD1Q9UP38 647 aa18.29■□□□□ 0.52
LINC00643-206ENST00000623985 PTPRFP10586 1907 aa18.29■□□□□ 0.52
LINC00643-206ENST00000623985 IREB2P48200 963 aaKnown RBP18.28■□□□□ 0.52
LINC00643-206ENST00000623985 FKBP1CQ5VVH2 108 aa18.28■□□□□ 0.52
LINC00643-206ENST00000623985 FAM83AQ86UY5 434 aa18.28■□□□□ 0.52
LINC00643-206ENST00000623985 NEUROD6Q96NK8 337 aa18.28■□□□□ 0.52
LINC00643-206ENST00000623985 TMEM39BQ9GZU3 492 aa18.28■□□□□ 0.52
LINC00643-206ENST00000623985 RCAN3Q9UKA8 241 aa18.28■□□□□ 0.52
LINC00643-206ENST00000623985 DAGLAQ9Y4D2 1042 aa18.28■□□□□ 0.52
LINC00643-206ENST00000623985 GPR108Q9NPR9 543 aa18.27■□□□□ 0.52
LINC00643-206ENST00000623985 PHIPQ8WWQ0 1821 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 ARID4AP29374 1257 aaPredicted RBP18.26■□□□□ 0.51
LINC00643-206ENST00000623985 CACNB3P54284 484 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 SREBF2Q12772 1141 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 OS9Q13438 667 aaPredicted RBP18.26■□□□□ 0.51
LINC00643-206ENST00000623985 DIXDC1Q155Q3 683 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 GORABQ5T7V8 394 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 SPRYD7Q5W111 196 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 CEP85Q6P2H3 762 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 RNF186Q9NXI6 227 aa18.26■□□□□ 0.51
LINC00643-206ENST00000623985 MYH1P12882 1939 aa18.25■□□□□ 0.51
LINC00643-206ENST00000623985 USP2O75604 605 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms