RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 GMLQ99445 158 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 BOLA2Q9H3K6 86 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 MYH2Q9UKX2 1941 aa12.6□□□□□ -0.39
SYNE1-240ENST00000610489 CYP2E1P05181 493 aaPredicted RBP12.6□□□□□ -0.39
SYNE1-240ENST00000610489 RPS12P25398 132 aaKnown RBP12.6□□□□□ -0.39
SYNE1-240ENST00000610489 GMPSP49915 693 aaPredicted RBP12.6□□□□□ -0.39
SYNE1-240ENST00000610489 ZGPATQ8N5A5 531 aaKnown RBP12.6□□□□□ -0.39
SYNE1-240ENST00000610489 DNAJC2Q99543 621 aaKnown RBP12.6□□□□□ -0.39
SYNE1-240ENST00000610489 HAUS7Q99871 368 aa12.6□□□□□ -0.39
SYNE1-240ENST00000610489 OSBPL3Q9H4L5 887 aa12.6□□□□□ -0.39
SYNE1-240ENST00000610489 NDUFB9Q9Y6M9 179 aa12.6□□□□□ -0.39
SYNE1-240ENST00000610489 ADAMTSL1Q8N6G6 1762 aa12.59□□□□□ -0.39
SYNE1-240ENST00000610489 L3MBTL3Q96JM7 780 aaPredicted RBP12.59□□□□□ -0.39
SYNE1-240ENST00000610489 SCNN1DP51172 638 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 GRIK5Q16478 980 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 TBC1D9Q6ZT07 1266 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 KIAA0825Q8IV33 1275 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 DPF2Q92785 391 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 PAG1Q9NWQ8 432 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 ABCF2Q9UG63 623 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 SUGT1Q9Y2Z0 365 aa12.58□□□□□ -0.39
SYNE1-240ENST00000610489 GOLIM4O00461 696 aa12.58□□□□□ -0.4
SYNE1-240ENST00000610489 PRDX5P30044 214 aa12.58□□□□□ -0.4
SYNE1-240ENST00000610489 DSG3P32926 999 aa12.58□□□□□ -0.4
SYNE1-240ENST00000610489 SPTY2D1Q68D10 685 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-240ENST00000610489 SKAP1Q86WV1 359 aa12.58□□□□□ -0.4
SYNE1-240ENST00000610489 EDC3Q96F86 508 aaKnown RBP12.58□□□□□ -0.4
SYNE1-240ENST00000610489 ANTXR1Q9H6X2 564 aa12.58□□□□□ -0.4
SYNE1-240ENST00000610489 PIH1D3Q9NQM4 214 aaKnown RBP12.58□□□□□ -0.4
SYNE1-240ENST00000610489 GPRC5DQ9NZD1 345 aa12.58□□□□□ -0.4
SYNE1-240ENST00000610489 ECM29Q5VYK3 1845 aa12.57□□□□□ -0.4
SYNE1-240ENST00000610489 F8W031 263 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-240ENST00000610489 LDHBP07195 334 aaKnown RBP12.57□□□□□ -0.4
SYNE1-240ENST00000610489 USP17L8P0C7I0 530 aa12.57□□□□□ -0.4
SYNE1-240ENST00000610489 TTF1Q15361 905 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-240ENST00000610489 ERICH6Q7L0X2 663 aa12.57□□□□□ -0.4
SYNE1-240ENST00000610489 TTF2Q9UNY4 1162 aaKnown RBP12.57□□□□□ -0.4
SYNE1-240ENST00000610489 SHTN1A0MZ66 631 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 LMOD1P29536 600 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-240ENST00000610489 ZNF280AP59817 542 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-240ENST00000610489 MICALL2Q8IY33 904 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 LRP2BPQ9P2M1 347 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 CNOT7Q9UIV1 285 aaKnown RBP12.56□□□□□ -0.4
SYNE1-240ENST00000610489 MAST3O60307 1309 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 MAP4K4O95819 1239 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-240ENST00000610489 RGS3P49796 1198 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 MMP14P50281 582 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 OGFOD1Q8N543 542 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 RAI14Q9P0K7 980 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 HDAC9Q9UKV0 1011 aa12.56□□□□□ -0.4
SYNE1-240ENST00000610489 IQCA1LA6NCM1 817 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 POTECB2RU33 542 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 IGSF3O75054 1194 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 IDH1O75874 414 aaKnown RBP12.55□□□□□ -0.4
SYNE1-240ENST00000610489 YY1P25490 414 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 EPS15P42566 896 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 MECOMQ03112 1051 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 TTC22Q5TAA0 569 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 DZIP1Q86YF9 867 aaKnown RBP12.55□□□□□ -0.4
SYNE1-240ENST00000610489 ZNF526Q8TF50 670 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-240ENST00000610489 HACL1Q9UJ83 578 aa12.55□□□□□ -0.4
SYNE1-240ENST00000610489 H7C1D1 291 aa12.54□□□□□ -0.4
SYNE1-240ENST00000610489 HDLBPQ00341 1268 aaKnown RBP12.54□□□□□ -0.4
SYNE1-240ENST00000610489 MAP3K12Q12852 859 aa12.54□□□□□ -0.4
SYNE1-240ENST00000610489 KBTBD3Q8NAB2 608 aa12.54□□□□□ -0.4
SYNE1-240ENST00000610489 ZNF384Q8TF68 577 aa12.54□□□□□ -0.4
SYNE1-240ENST00000610489 NSUN4Q96CB9 384 aaKnown RBP12.54□□□□□ -0.4
SYNE1-240ENST00000610489 SERPINA10Q9UK55 444 aa12.54□□□□□ -0.4
SYNE1-240ENST00000610489 GSPT1P15170 499 aaKnown RBP12.53□□□□□ -0.4
SYNE1-240ENST00000610489 CRKP46108 304 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 DIXDC1Q155Q3 683 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 TEKT1Q969V4 418 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 EVI5LQ96CN4 794 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 MYOZ2Q9NPC6 264 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 NMRK2Q9NPI5 230 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 ADARB2Q9NS39 739 aaKnown RBP12.53□□□□□ -0.4
SYNE1-240ENST00000610489 POLR2AP24928 1970 aaKnown RBP12.53□□□□□ -0.4
SYNE1-240ENST00000610489 TRIM6-TRIM34B2RNG4 842 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 VEGFAP15692 232 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-240ENST00000610489 EPHX2P34913 555 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 GSTO1P78417 241 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 NAA16Q6N069 864 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-240ENST00000610489 HHIPL2Q6UWX4 724 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 SAMD7Q7Z3H4 446 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 SLF2Q8IX21 1173 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 CNTROBQ8N137 903 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 MTMR14Q8NCE2 650 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 MRIQ9BWK5 157 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.53□□□□□ -0.4
SYNE1-240ENST00000610489 TAF1DQ9H5J8 278 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-240ENST00000610489 RRAGCQ9HB90 399 aa12.53□□□□□ -0.4
SYNE1-240ENST00000610489 CDK5RAP2Q96SN8 1893 aa12.52□□□□□ -0.4
SYNE1-240ENST00000610489 EGFRP00533 1210 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 PDE6AP16499 860 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 KIF4BQ2VIQ3 1234 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 CFAP100Q494V2 611 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 TBC1D10BQ4KMP7 808 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-240ENST00000610489 SLC9C2Q5TAH2 1124 aa12.52□□□□□ -0.41
SYNE1-240ENST00000610489 TMED8Q6PL24 325 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-240ENST00000610489 MAGEB6Q8N7X4 407 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms