RNA–Protein interactions for RNA: ENST00000607559.1

TPM2-208, Transcript of tropomyosin 2, human

TSL 2

Gene TPM2, Length 518 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM2-208	ENST00000607559	PUM3	Q15397	648 aa	Known RBP	13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	MAP3K11	Q16584	847 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	CAVIN4	Q5BKX8	364 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	METTL24	Q5JXM2	366 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	LDLRAD1	Q5T700	205 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	ATF7IP	Q6VMQ6	1270 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	KLHDC4	Q8TBB5	520 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	LPIN2	Q92539	896 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	ABHD8	Q96I13	439 aa		13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	PRMT6	Q96LA8	375 aa	Predicted RBP	13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	COL1A1	P02452	1464 aa	Predicted RBP	13.4	□□□□□ -0.26
TPM2-208	ENST00000607559	TRIM27	P14373	513 aa		13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	ZNF157	P51786	506 aa	Predicted RBP	13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	MFSD14B	Q5SR56	506 aa		13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	TBC1D22A	Q8WUA7	517 aa		13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	FBXW7	Q969H0	707 aa		13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	ZIC5	Q96T25	663 aa		13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	MEIS3	Q99687	375 aa		13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	DEFB129	Q9H1M3	183 aa		13.39	□□□□□ -0.27
TPM2-208	ENST00000607559	BCAR3	O75815	825 aa		13.38	□□□□□ -0.27
TPM2-208	ENST00000607559	IFIT1	P09914	478 aa	Known RBP	13.38	□□□□□ -0.27
TPM2-208	ENST00000607559	IL15	P40933	162 aa	Predicted RBP	13.38	□□□□□ -0.27
TPM2-208	ENST00000607559	CFAP100	Q494V2	611 aa		13.38	□□□□□ -0.27
TPM2-208	ENST00000607559	MS4A3	Q96HJ5	214 aa		13.38	□□□□□ -0.27
TPM2-208	ENST00000607559	SAGE1	Q9NXZ1	904 aa		13.38	□□□□□ -0.27
TPM2-208	ENST00000607559	LRRFIP2	Q9Y608	721 aa	Known RBP	13.38	□□□□□ -0.27
TPM2-208	ENST00000607559	NF2	P35240	595 aa		13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	BCAM	P50895	628 aa		13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	KIF23	Q02241	960 aa	Predicted RBP	13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	CSRNP1	Q96S65	589 aa		13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	CEP126	Q9P2H0	1117 aa		13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	TSKS	Q9UJT2	592 aa		13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	CASP8AP2	Q9UKL3	1982 aa		13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	ZBED9	Q6R2W3	1325 aa		13.37	□□□□□ -0.27
TPM2-208	ENST00000607559	PAPPA2	Q9BXP8	1791 aa		13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	MYO1B	O43795	1136 aa		13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	FKBP1C	Q5VVH2	108 aa		13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	PRAMEF18	Q5VWM3	479 aa		13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	VPS37D	Q86XT2	251 aa		13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	RASAL3	Q86YV0	1011 aa		13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	DZIP1L	Q8IYY4	767 aa	Known RBP	13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	TTF2	Q9UNY4	1162 aa	Known RBP	13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	PCDHAC2	Q9Y5I4	1007 aa		13.36	□□□□□ -0.27
TPM2-208	ENST00000607559	SLC5A1	P13866	664 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	TM4SF4	P48230	202 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	GRIK5	Q16478	980 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	SUPT20HL1	Q3ZLR7	823 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	HHIPL2	Q6UWX4	724 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	WDR66	Q8TBY9	1149 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	PCDHB13	Q9Y5F0	798 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	AOX1	Q06278	1338 aa		13.35	□□□□□ -0.27
TPM2-208	ENST00000607559	UBE2Q2L	H0YL09	131 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	SEMA3E	O15041	775 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	TNFAIP1	Q13829	316 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	ZKSCAN2	Q63HK3	967 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	MOB2	Q70IA6	237 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	ARMC9	Q7Z3E5	817 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	ZDHHC15	Q96MV8	337 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	TEPSIN	Q96N21	525 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	CFHR5	Q9BXR6	569 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	ZNF70	Q9UC06	446 aa	Predicted RBP	13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	SCAF8	Q9UPN6	1271 aa	Known RBP	13.34	□□□□□ -0.27
TPM2-208	ENST00000607559	SALL1	Q9NSC2	1324 aa		13.34	□□□□□ -0.27
TPM2-208	ENST00000607559		F8W031	263 aa	Predicted RBP	13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	GNAI2	P04899	355 aa		13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	CRK	P46108	304 aa		13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	RASA3	Q14644	834 aa		13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	ATP2B3	Q16720	1220 aa		13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	NOM1	Q5C9Z4	860 aa	Known RBP	13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	DCBLD2	Q96PD2	775 aa		13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	RNF186	Q9NXI6	227 aa		13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	JAG2	Q9Y219	1238 aa		13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	PDS5A	Q29RF7	1337 aa	Known RBP	13.33	□□□□□ -0.28
TPM2-208	ENST00000607559	CCDC85C	A6NKD9	419 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	SRGAP3	O43295	1099 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	PPP1R12B	O60237	982 aa	Predicted RBP	13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	INHBE	P58166	350 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	FAM83A	Q86UY5	434 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	TEKT1	Q969V4	418 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	MCOLN1	Q9GZU1	580 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	GNL3L	Q9NVN8	582 aa	Known RBP	13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	PA2G4	Q9UQ80	394 aa	Known RBP	13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	TNN	Q9UQP3	1299 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	AKAP11	Q9UKA4	1901 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	MAST3	O60307	1309 aa		13.32	□□□□□ -0.28
TPM2-208	ENST00000607559	PDE4DIP	Q5VU43	2346 aa		13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	CLRN2	A0PK11	232 aa		13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	ZBTB7B	O15156	539 aa	Predicted RBP	13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	FRAT2	O75474	233 aa	Predicted RBP	13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	USP2	O75604	605 aa	Predicted RBP	13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	RBM5	P52756	815 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	DGKZ	Q13574	1117 aa		13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	FRAT1	Q92837	279 aa	Predicted RBP	13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	SIL1	Q9H173	461 aa		13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	TDRD3	Q9H7E2	651 aa	Known RBP	13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	DENND2A	Q9ULE3	1009 aa		13.31	□□□□□ -0.28
TPM2-208	ENST00000607559	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms