RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 IGF2BP3O00425 579 aaKnown RBP eCLIP6.55□□□□□ -1.36
VRK3-226ENST00000602029 SOX1O00570 391 aaPredicted RBP6.55□□□□□ -1.36
VRK3-226ENST00000602029 SPDYE6P0CI01 402 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 CCL15Q16663 113 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 LDLRAD1Q5T700 205 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 LMBR1LQ6UX01 489 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 LINS1Q8NG48 757 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 ZNF594Q96JF6 807 aaPredicted RBP6.55□□□□□ -1.36
VRK3-226ENST00000602029 TDRD3Q9H7E2 651 aaKnown RBP6.55□□□□□ -1.36
VRK3-226ENST00000602029 IQSEC3Q9UPP2 1182 aaPredicted RBP6.55□□□□□ -1.36
VRK3-226ENST00000602029 PTPN22Q9Y2R2 807 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 ZSWIM8A7E2V4 1837 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 SPEF2Q9C093 1822 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 SCN9AQ15858 1988 aa6.55□□□□□ -1.36
VRK3-226ENST00000602029 ALPK3Q96L96 1907 aa6.54□□□□□ -1.36
VRK3-226ENST00000602029 COL1A1P02452 1464 aaPredicted RBP6.54□□□□□ -1.36
VRK3-226ENST00000602029 HIBADHP31937 336 aaKnown RBP6.54□□□□□ -1.36
VRK3-226ENST00000602029 GYG1P46976 350 aa6.54□□□□□ -1.36
VRK3-226ENST00000602029 GTF2A2P52657 109 aa6.54□□□□□ -1.36
VRK3-226ENST00000602029 CAVIN4Q5BKX8 364 aa6.54□□□□□ -1.36
VRK3-226ENST00000602029 NOM1Q5C9Z4 860 aaKnown RBP6.54□□□□□ -1.36
VRK3-226ENST00000602029 CERS5Q8N5B7 392 aa6.54□□□□□ -1.36
VRK3-226ENST00000602029 PRMT6Q96LA8 375 aaPredicted RBP6.54□□□□□ -1.36
VRK3-226ENST00000602029 MRS2Q9HD23 443 aa6.54□□□□□ -1.36
VRK3-226ENST00000602029 ZNF70Q9UC06 446 aaPredicted RBP6.54□□□□□ -1.36
VRK3-226ENST00000602029 USP2O75604 605 aaPredicted RBP6.53□□□□□ -1.36
VRK3-226ENST00000602029 CRKP46108 304 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 CACNB3P54284 484 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 CAP1Q01518 475 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 EXOSC9Q06265 439 aaKnown RBP6.53□□□□□ -1.36
VRK3-226ENST00000602029 METTL24Q5JXM2 366 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 ERICH6BQ5W0A0 696 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 WWC1Q8IX03 1113 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 DZIP1LQ8IYY4 767 aaKnown RBP6.53□□□□□ -1.36
VRK3-226ENST00000602029 DPF3Q92784 378 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 HOOK2Q96ED9 719 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 LRCH3Q96II8 777 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 WRNIP1Q96S55 665 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 PLA2G12BQ9BX93 195 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 TMEM39BQ9GZU3 492 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 SPINK5Q9NQ38 1064 aaPredicted RBP6.53□□□□□ -1.36
VRK3-226ENST00000602029 TAOK2Q9UL54 1235 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 PTCH2Q9Y6C5 1203 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 LAMB1P07942 1786 aa6.53□□□□□ -1.36
VRK3-226ENST00000602029 FANCIQ9NVI1 1328 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 MUC3AQ02505 3323 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 GRM8O00222 908 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 FMNL1O95466 1100 aaPredicted RBP6.52□□□□□ -1.37
VRK3-226ENST00000602029 CSF1RP07333 972 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 CETPP11597 493 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 IL1R1P14778 569 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 GJA5P36382 358 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 MAP3K9P80192 1104 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 VGLL4Q14135 290 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 SPDYE2Q495Y8 402 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 DCAF15Q66K64 600 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 MTMR14Q8NCE2 650 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 RAET1EQ8TD07 263 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 SH3TC2Q8TF17 1288 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 TEKT1Q969V4 418 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 ZBED3Q96IU2 234 aaPredicted RBP6.52□□□□□ -1.37
VRK3-226ENST00000602029 CFHR5Q9BXR6 569 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 SRCIN1Q9C0H9 1055 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 PRO3102Q9H379 93 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 RAPGEFL1Q9UHV5 662 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 SERPINA10Q9UK55 444 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 TTC28Q96AY4 2481 aa6.52□□□□□ -1.37
VRK3-226ENST00000602029 AOX1Q06278 1338 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 UNCXA6NJT0 531 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 TCP10Q12799 353 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 SNAPC2Q13487 334 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 UBE4AQ14139 1066 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 MAP3K11Q16584 847 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 MIGA2Q7L4E1 593 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 FAM43AQ8N2R8 423 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.51□□□□□ -1.37
VRK3-226ENST00000602029 BRI3BPQ8WY22 251 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 PTPN18Q99952 460 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 RNF39Q9H2S5 420 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 SUPT16HQ9Y5B9 1047 aaKnown RBP6.51□□□□□ -1.37
VRK3-226ENST00000602029 SSC5DA1L4H1 1573 aa6.51□□□□□ -1.37
VRK3-226ENST00000602029 MAST3O60307 1309 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 MROH5Q6ZUA9 1318 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 LAMA2P24043 3122 aaKnown RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 ZBTB22O15209 634 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 IFIT1P09914 478 aaKnown RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 HOXD10P28358 340 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 FKBP1AP62942 108 aaKnown RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 FOXO4P98177 505 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 EPHA10Q5JZY3 1008 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 BEND3Q5T5X7 828 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 C15orf52Q6ZUT6 534 aaKnown RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 ERO1BQ86YB8 467 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 ZSCAN29Q8IWY8 852 aaPredicted RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 CDAN1Q8IWY9 1227 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 FAM9BQ8IZU0 186 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 TBC1D22AQ8WUA7 517 aa6.5□□□□□ -1.37
VRK3-226ENST00000602029 ZKSCAN4Q969J2 545 aaPredicted RBP6.5□□□□□ -1.37
VRK3-226ENST00000602029 ARMC5Q96C12 935 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms