RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 MRPL50Q8N5N7 158 aaKnown RBP22.39■■□□□ 1.17
SHKBP1-227ENST00000602011 A0A1B0GUL6 1792 aa22.39■■□□□ 1.17
SHKBP1-227ENST00000602011 TESPA1A2RU30 521 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 FRAT2O75474 233 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 PDE8BO95263 885 aa22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 METTL24Q5JXM2 366 aa22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 OTOP1Q7RTM1 612 aa22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 HOOK2Q96ED9 719 aa22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 PUS3Q9BZE2 481 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 BICC1Q9H694 974 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-227ENST00000602011 KIF16BQ96L93 1317 aa22.37■■□□□ 1.17
SHKBP1-227ENST00000602011 POTEFA5A3E0 1075 aa22.37■■□□□ 1.17
SHKBP1-227ENST00000602011 CRKP46108 304 aa22.37■■□□□ 1.17
SHKBP1-227ENST00000602011 INTS3Q68E01 1043 aaKnown RBP22.37■■□□□ 1.17
SHKBP1-227ENST00000602011 ERO1AQ96HE7 468 aa22.37■■□□□ 1.17
SHKBP1-227ENST00000602011 CAP1Q01518 475 aa22.36■■□□□ 1.17
SHKBP1-227ENST00000602011 ARHGEF6Q15052 776 aa22.36■■□□□ 1.17
SHKBP1-227ENST00000602011 TDRD3Q9H7E2 651 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-227ENST00000602011 ECM29Q5VYK3 1845 aa22.36■■□□□ 1.17
SHKBP1-227ENST00000602011 MKI67P46013 3256 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-227ENST00000602011 FKBP1CQ5VVH2 108 aa22.35■■□□□ 1.17
SHKBP1-227ENST00000602011 CDAN1Q8IWY9 1227 aa22.35■■□□□ 1.17
SHKBP1-227ENST00000602011 CD99L2Q8TCZ2 262 aa22.35■■□□□ 1.17
SHKBP1-227ENST00000602011 TEKT1Q969V4 418 aa22.35■■□□□ 1.17
SHKBP1-227ENST00000602011 HDAC5Q9UQL6 1122 aa22.35■■□□□ 1.17
SHKBP1-227ENST00000602011 MAST3O60307 1309 aa22.34■■□□□ 1.17
SHKBP1-227ENST00000602011 IFIT1P09914 478 aaKnown RBP22.34■■□□□ 1.17
SHKBP1-227ENST00000602011 MAP3K9P80192 1104 aa22.34■■□□□ 1.17
SHKBP1-227ENST00000602011 CRHR2Q13324 411 aa22.34■■□□□ 1.17
SHKBP1-227ENST00000602011 ALDH1L2Q3SY69 923 aa22.34■■□□□ 1.17
SHKBP1-227ENST00000602011 CENPFP49454 3210 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 WDHD1O75717 1129 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 FAM83AQ86UY5 434 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 ANKRD44Q8N8A2 993 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 VGLL2Q8N8G2 317 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 TEPSINQ96N21 525 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 PTPN18Q99952 460 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 USP44Q9H0E7 712 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 TMOD2Q9NZR1 351 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 FBXO3Q9UK99 471 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 CSADQ9Y600 493 aa22.33■■□□□ 1.17
SHKBP1-227ENST00000602011 GTF2A2P52657 109 aa22.32■■□□□ 1.16
SHKBP1-227ENST00000602011 PUM3Q15397 648 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-227ENST00000602011 LRRC24Q50LG9 513 aa22.32■■□□□ 1.16
SHKBP1-227ENST00000602011 ZDHHC15Q96MV8 337 aa22.32■■□□□ 1.16
SHKBP1-227ENST00000602011 ELP3Q9H9T3 547 aa22.32■■□□□ 1.16
SHKBP1-227ENST00000602011 HHIPL2Q6UWX4 724 aa22.31■■□□□ 1.16
SHKBP1-227ENST00000602011 CNKSR2Q8WXI2 1034 aa22.31■■□□□ 1.16
SHKBP1-227ENST00000602011 SSH1Q8WYL5 1049 aa22.31■■□□□ 1.16
SHKBP1-227ENST00000602011 OPTNQ96CV9 577 aa22.31■■□□□ 1.16
SHKBP1-227ENST00000602011 OTOFQ9HC10 1997 aa22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 TCP10L2B9ZVM9 353 aa22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 CT47B1P0C2W7 299 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 SP3Q02447 781 aa22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 CHAF1AQ13111 956 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 WDR66Q8TBY9 1149 aa22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 PTPN22Q9Y2R2 807 aa22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 KIAA0100Q14667 2235 aaKnown RBP22.3■■□□□ 1.16
SHKBP1-227ENST00000602011 EYA2O00167 538 aa22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 SLFN5Q08AF3 891 aa22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 LPIN2Q92539 896 aa22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 MS4A4AQ96JQ5 239 aa22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 ZCCHC17Q9NP64 241 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 LAMB1P07942 1786 aa22.29■■□□□ 1.16
SHKBP1-227ENST00000602011 SLC5A1P13866 664 aa22.28■■□□□ 1.16
SHKBP1-227ENST00000602011 FGFR2P21802 821 aa22.28■■□□□ 1.16
SHKBP1-227ENST00000602011 BCAMP50895 628 aa22.28■■□□□ 1.16
SHKBP1-227ENST00000602011 GRIK5Q16478 980 aa22.28■■□□□ 1.16
SHKBP1-227ENST00000602011 TMEM39BQ9GZU3 492 aa22.28■■□□□ 1.16
SHKBP1-227ENST00000602011 EFCC1Q9HA90 598 aa22.28■■□□□ 1.16
SHKBP1-227ENST00000602011 ZFYVE28Q9HCC9 887 aa22.28■■□□□ 1.16
SHKBP1-227ENST00000602011 EN2P19622 333 aaPredicted RBP22.27■■□□□ 1.16
SHKBP1-227ENST00000602011 DCAF15Q66K64 600 aa22.27■■□□□ 1.16
SHKBP1-227ENST00000602011 IQSEC3Q9UPP2 1182 aaPredicted RBP22.27■■□□□ 1.16
SHKBP1-227ENST00000602011 BRCA2P51587 3418 aa22.27■■□□□ 1.15
SHKBP1-227ENST00000602011 ZBTB22O15209 634 aa22.26■■□□□ 1.15
SHKBP1-227ENST00000602011 VGLL4Q14135 290 aa22.26■■□□□ 1.15
SHKBP1-227ENST00000602011 APOBEC3HQ6NTF7 200 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-227ENST00000602011 ERO1BQ86YB8 467 aa22.26■■□□□ 1.15
SHKBP1-227ENST00000602011 GNL3LQ9NVN8 582 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-227ENST00000602011 SPDYE5A6NIY4 337 aa22.25■■□□□ 1.15
SHKBP1-227ENST00000602011 BRI3BPQ8WY22 251 aa22.25■■□□□ 1.15
SHKBP1-227ENST00000602011 CCL15-CCL14A0A0B4J2E2 113 aa22.24■■□□□ 1.15
SHKBP1-227ENST00000602011 CIAO1O76071 339 aa22.24■■□□□ 1.15
SHKBP1-227ENST00000602011 CETPP11597 493 aa22.24■■□□□ 1.15
SHKBP1-227ENST00000602011 CCL15Q16663 113 aa22.24■■□□□ 1.15
SHKBP1-227ENST00000602011 RFX5P48382 616 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 CACNB3P54284 484 aa22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 TAF1CQ15572 869 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 NBPF11Q86T75 865 aa22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 KLHDC4Q8TBB5 520 aa22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 ARMC5Q96C12 935 aa22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 SMC4Q9NTJ3 1288 aa22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 CEP126Q9P2H0 1117 aa22.23■■□□□ 1.15
SHKBP1-227ENST00000602011 SEMA3EO15041 775 aa22.22■■□□□ 1.15
SHKBP1-227ENST00000602011 GNRH1P01148 92 aa22.22■■□□□ 1.15
SHKBP1-227ENST00000602011 UBTFL1P0CB47 393 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-227ENST00000602011 SNAPC2Q13487 334 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms