RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 EXOSC9Q06265 439 aaKnown RBP7.78□□□□□ -1.16
VRK3-220ENST00000600259 OTUD7BQ6GQQ9 843 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 WDR63Q8IWG1 891 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 FAM43AQ8N2R8 423 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.78□□□□□ -1.16
VRK3-220ENST00000600259 OPTNQ96CV9 577 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 ELP3Q9H9T3 547 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 SERPINA10Q9UK55 444 aa7.78□□□□□ -1.16
VRK3-220ENST00000600259 GRM8O00222 908 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 CRKP46108 304 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 FXR1P51114 621 aaKnown RBP eCLIP7.77□□□□□ -1.17
VRK3-220ENST00000600259 VGLL4Q14135 290 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 CCDC57Q2TAC2 916 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 MFSD14BQ5SR56 506 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 SUCLG2Q96I99 432 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 MRIQ9BWK5 157 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 TMEM39BQ9GZU3 492 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 TTF2Q9UNY4 1162 aaKnown RBP7.77□□□□□ -1.17
VRK3-220ENST00000600259 PTCH2Q9Y6C5 1203 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 SPEF2Q9C093 1822 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 BRCA2P51587 3418 aa7.77□□□□□ -1.17
VRK3-220ENST00000600259 LAMB1P07942 1786 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 CEP290O15078 2479 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 CCL15-CCL14A0A0B4J2E2 113 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 SPDYE5A6NIY4 337 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 TCP10L2B9ZVM9 353 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 ALDH1L1O75891 902 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 GTF2A2P52657 109 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 RBM5P52756 815 aaKnown RBP eCLIP7.76□□□□□ -1.17
VRK3-220ENST00000600259 HDLBPQ00341 1268 aaKnown RBP7.76□□□□□ -1.17
VRK3-220ENST00000600259 TNFAIP1Q13829 316 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 CCL15Q16663 113 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 RABL6Q3YEC7 729 aaPredicted RBP7.76□□□□□ -1.17
VRK3-220ENST00000600259 APOBEC3HQ6NTF7 200 aaKnown RBP7.76□□□□□ -1.17
VRK3-220ENST00000600259 VGLL2Q8N8G2 317 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 CNNM1Q9NRU3 951 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 CHMP3Q9Y3E7 222 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 SNCAIPQ9Y6H5 919 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 UTYO14607 1347 aa7.76□□□□□ -1.17
VRK3-220ENST00000600259 BTBD19C9JJ37 291 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 TLR2O60603 784 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 NBPF7P0C2Y1 421 aaPredicted RBP7.75□□□□□ -1.17
VRK3-220ENST00000600259 CTGFP29279 349 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 TAF1CQ15572 869 aaPredicted RBP7.75□□□□□ -1.17
VRK3-220ENST00000600259 LRRC24Q50LG9 513 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 ANKRD44Q8N8A2 993 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 OTUD5Q96G74 571 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 ARHGAP39Q9C0H5 1083 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 RNF39Q9H2S5 420 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 ZFYVE28Q9HCC9 887 aa7.75□□□□□ -1.17
VRK3-220ENST00000600259 COLQQ9Y215 455 aaPredicted RBP7.75□□□□□ -1.17
VRK3-220ENST00000600259 U3KPZ7 1027 aaPredicted RBP7.75□□□□□ -1.17
VRK3-220ENST00000600259 IRF6O14896 467 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 FGFR2P21802 821 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 CACNB3P54284 484 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 MOGSQ13724 837 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 TAF7LQ5H9L4 462 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 FKBP1CQ5VVH2 108 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 C17orf99Q6UX52 265 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 FAM83AQ86UY5 434 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 ERO1BQ86YB8 467 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 ZKSCAN4Q969J2 545 aaPredicted RBP7.74□□□□□ -1.17
VRK3-220ENST00000600259 ZDHHC15Q96MV8 337 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 TMEM106CQ9BVX2 250 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 ZCCHC17Q9NP64 241 aaKnown RBP7.74□□□□□ -1.17
VRK3-220ENST00000600259 C9orf78Q9NZ63 289 aaPredicted RBP7.74□□□□□ -1.17
VRK3-220ENST00000600259 ZNF112Q9UJU3 913 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 IQSEC3Q9UPP2 1182 aaPredicted RBP7.74□□□□□ -1.17
VRK3-220ENST00000600259 SALL2Q9Y467 1007 aaPredicted RBP7.74□□□□□ -1.17
VRK3-220ENST00000600259 TRIOBPQ9H2D6 2365 aa7.74□□□□□ -1.17
VRK3-220ENST00000600259 PDE8BO95263 885 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 CETPP11597 493 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 TNNI2P48788 182 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 BCAMP50895 628 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 LACTBP83111 547 aaPredicted RBP7.73□□□□□ -1.17
VRK3-220ENST00000600259 PPIL2Q13356 520 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 ARHGEF6Q15052 776 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 SLC9C1Q4G0N8 1177 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 HHIPL2Q6UWX4 724 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 UBE2Q1Q7Z7E8 422 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 NBPF11Q86T75 865 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 SH3TC2Q8TF17 1288 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 SRCIN1Q9C0H9 1055 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 BICC1Q9H694 974 aaKnown RBP7.73□□□□□ -1.17
VRK3-220ENST00000600259 CSADQ9Y600 493 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 A0A1B0GUL6 1792 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 MROH5Q6ZUA9 1318 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 ADGRA2Q96PE1 1338 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 ECM29Q5VYK3 1845 aa7.73□□□□□ -1.17
VRK3-220ENST00000600259 RANBP2P49792 3224 aaKnown RBP7.73□□□□□ -1.17
VRK3-220ENST00000600259 RBBP6Q7Z6E9 1792 aaKnown RBP7.72□□□□□ -1.17
VRK3-220ENST00000600259 H0YGN5 161 aa7.72□□□□□ -1.17
VRK3-220ENST00000600259 INPP5BP32019 993 aa7.72□□□□□ -1.17
VRK3-220ENST00000600259 RFX5P48382 616 aaPredicted RBP7.72□□□□□ -1.17
VRK3-220ENST00000600259 PPATQ06203 517 aa7.72□□□□□ -1.17
VRK3-220ENST00000600259 CHAF1AQ13111 956 aaPredicted RBP7.72□□□□□ -1.17
VRK3-220ENST00000600259 MTFR1Q15390 333 aa7.72□□□□□ -1.17
VRK3-220ENST00000600259 SLC4A10Q6U841 1118 aa7.72□□□□□ -1.17
VRK3-220ENST00000600259 KLHDC4Q8TBB5 520 aa7.72□□□□□ -1.17
VRK3-220ENST00000600259 TBC1D22AQ8WUA7 517 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms