RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	DZIP1L	Q8IYY4	767 aa	Known RBP	18.49	■□□□□ 0.55
IRF3-223	ENST00000599223	PTPRC	P08575	1304 aa		18.49	■□□□□ 0.55
IRF3-223	ENST00000599223	CRK	P46108	304 aa		18.48	■□□□□ 0.55
IRF3-223	ENST00000599223	CHAF1A	Q13111	956 aa	Predicted RBP	18.48	■□□□□ 0.55
IRF3-223	ENST00000599223	PKN2	Q16513	984 aa	Known RBP	18.48	■□□□□ 0.55
IRF3-223	ENST00000599223	SUPT20HL1	Q3ZLR7	823 aa		18.48	■□□□□ 0.55
IRF3-223	ENST00000599223	METTL24	Q5JXM2	366 aa		18.48	■□□□□ 0.55
IRF3-223	ENST00000599223	USP44	Q9H0E7	712 aa		18.48	■□□□□ 0.55
IRF3-223	ENST00000599223	FBXO46	Q6PJ61	603 aa	Predicted RBP	18.47	■□□□□ 0.55
IRF3-223	ENST00000599223	CNKSR2	Q8WXI2	1034 aa		18.47	■□□□□ 0.55
IRF3-223	ENST00000599223	TMEM39B	Q9GZU3	492 aa		18.47	■□□□□ 0.55
IRF3-223	ENST00000599223	ZSWIM8	A7E2V4	1837 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	TCP10L2	B9ZVM9	353 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	PDE8B	O95263	885 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	IREB2	P48200	963 aa	Known RBP	18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	CACNB3	P54284	484 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	CAP1	Q01518	475 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	CDCA7L	Q96GN5	454 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	PTPN18	Q99952	460 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	ELP3	Q9H9T3	547 aa		18.46	■□□□□ 0.55
IRF3-223	ENST00000599223	RBBP6	Q7Z6E9	1792 aa	Known RBP	18.45	■□□□□ 0.54
IRF3-223	ENST00000599223		E9PSI1	815 aa		18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	ALDH1A1	P00352	501 aa		18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	RFX5	P48382	616 aa	Predicted RBP	18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	BCAM	P50895	628 aa		18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	SLFN5	Q08AF3	891 aa		18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	CRHR2	Q13324	411 aa		18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	TNFAIP1	Q13829	316 aa		18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	ANKRD13A	Q8IZ07	590 aa		18.45	■□□□□ 0.54
IRF3-223	ENST00000599223	UNCX	A6NJT0	531 aa		18.44	■□□□□ 0.54
IRF3-223	ENST00000599223	FGFR2	P21802	821 aa		18.44	■□□□□ 0.54
IRF3-223	ENST00000599223	VGLL4	Q14135	290 aa		18.44	■□□□□ 0.54
IRF3-223	ENST00000599223	VPS37D	Q86XT2	251 aa		18.44	■□□□□ 0.54
IRF3-223	ENST00000599223	OPTN	Q96CV9	577 aa		18.44	■□□□□ 0.54
IRF3-223	ENST00000599223	INHBE	P58166	350 aa		18.43	■□□□□ 0.54
IRF3-223	ENST00000599223	OTOP1	Q7RTM1	612 aa		18.43	■□□□□ 0.54
IRF3-223	ENST00000599223	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	18.43	■□□□□ 0.54	4e-6	■■■■□ 20.6
IRF3-223	ENST00000599223	MS4A4A	Q96JQ5	239 aa		18.43	■□□□□ 0.54
IRF3-223	ENST00000599223	TESPA1	A2RU30	521 aa	Predicted RBP	18.42	■□□□□ 0.54
IRF3-223	ENST00000599223	PUM3	Q15397	648 aa	Known RBP	18.42	■□□□□ 0.54
IRF3-223	ENST00000599223	CAVIN4	Q5BKX8	364 aa		18.42	■□□□□ 0.54
IRF3-223	ENST00000599223	TRIM17	Q9Y577	477 aa		18.42	■□□□□ 0.54
IRF3-223	ENST00000599223	KIF16B	Q96L93	1317 aa		18.42	■□□□□ 0.54
IRF3-223	ENST00000599223	CD99L2	Q8TCZ2	262 aa		18.41	■□□□□ 0.54
IRF3-223	ENST00000599223	TBC1D22A	Q8WUA7	517 aa		18.41	■□□□□ 0.54
IRF3-223	ENST00000599223	BRI3BP	Q8WY22	251 aa		18.41	■□□□□ 0.54
IRF3-223	ENST00000599223	TEKT1	Q969V4	418 aa		18.41	■□□□□ 0.54
IRF3-223	ENST00000599223	ZDHHC15	Q96MV8	337 aa		18.41	■□□□□ 0.54
IRF3-223	ENST00000599223	SMC4	Q9NTJ3	1288 aa		18.41	■□□□□ 0.54
IRF3-223	ENST00000599223	KIAA0100	Q14667	2235 aa	Known RBP	18.4	■□□□□ 0.54
IRF3-223	ENST00000599223	EYA2	O00167	538 aa		18.4	■□□□□ 0.54
IRF3-223	ENST00000599223	FRAT2	O75474	233 aa	Predicted RBP	18.4	■□□□□ 0.54
IRF3-223	ENST00000599223	HDLBP	Q00341	1268 aa	Known RBP	18.4	■□□□□ 0.54
IRF3-223	ENST00000599223	APOBEC3H	Q6NTF7	200 aa	Known RBP	18.4	■□□□□ 0.54
IRF3-223	ENST00000599223	ATG9A	Q7Z3C6	839 aa		18.4	■□□□□ 0.54
IRF3-223	ENST00000599223	ALDH1L2	Q3SY69	923 aa		18.39	■□□□□ 0.53
IRF3-223	ENST00000599223	SNCAIP	Q9Y6H5	919 aa		18.39	■□□□□ 0.53
IRF3-223	ENST00000599223	RPAP1	Q9BWH6	1393 aa	Predicted RBP	18.39	■□□□□ 0.53
IRF3-223	ENST00000599223	DOCK2	Q92608	1830 aa		18.38	■□□□□ 0.53
IRF3-223	ENST00000599223	IFIT1	P09914	478 aa	Known RBP	18.38	■□□□□ 0.53
IRF3-223	ENST00000599223	TNNI2	P48788	182 aa		18.38	■□□□□ 0.53
IRF3-223	ENST00000599223	TRMT2A	Q8IZ69	625 aa	Known RBP	18.38	■□□□□ 0.53
IRF3-223	ENST00000599223	OTUD5	Q96G74	571 aa		18.38	■□□□□ 0.53
IRF3-223	ENST00000599223	CCL15-CCL14	A0A0B4J2E2	113 aa		18.37	■□□□□ 0.53
IRF3-223	ENST00000599223	MAP3K9	P80192	1104 aa		18.37	■□□□□ 0.53
IRF3-223	ENST00000599223	CCL15	Q16663	113 aa		18.37	■□□□□ 0.53
IRF3-223	ENST00000599223	FAM43A	Q8N2R8	423 aa		18.37	■□□□□ 0.53
IRF3-223	ENST00000599223	SIL1	Q9H173	461 aa		18.37	■□□□□ 0.53
IRF3-223	ENST00000599223	POTEF	A5A3E0	1075 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	SPDYE5	A6NIY4	337 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	MAST3	O60307	1309 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	SLC5A1	P13866	664 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	DIXDC1	Q155Q3	683 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	AK9	Q5TCS8	1911 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	LPIN2	Q92539	896 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	ERO1A	Q96HE7	468 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	WRNIP1	Q96S55	665 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	MYH2	Q9UKX2	1941 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	CSAD	Q9Y600	493 aa		18.36	■□□□□ 0.53
IRF3-223	ENST00000599223	PRDX5	P30044	214 aa		18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	PRPF38B	Q5VTL8	546 aa	Known RBP	18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	OTUD7B	Q6GQQ9	843 aa		18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	FAM83A	Q86UY5	434 aa		18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	ZKSCAN4	Q969J2	545 aa	Predicted RBP	18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	PTPN22	Q9Y2R2	807 aa		18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	SUGT1	Q9Y2Z0	365 aa		18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	DAGLA	Q9Y4D2	1042 aa		18.35	■□□□□ 0.53
IRF3-223	ENST00000599223	UBTFL1	P0CB47	393 aa	Predicted RBP	18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	GTF2A2	P52657	109 aa		18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	SP3	Q02447	781 aa		18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	NFIA	Q12857	509 aa		18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	TAF1C	Q15572	869 aa	Predicted RBP	18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	FKBP1C	Q5VVH2	108 aa		18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	HHIPL2	Q6UWX4	724 aa		18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	MRI	Q9BWK5	157 aa		18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	TMOD2	Q9NZR1	351 aa		18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	NOB1	Q9ULX3	412 aa	Known RBP	18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	PA2G4	Q9UQ80	394 aa	Known RBP	18.34	■□□□□ 0.53
IRF3-223	ENST00000599223	LRRFIP2	Q9Y608	721 aa	Known RBP	18.34	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms