RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 USP17L4A6NCW7 530 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 NFKBIEO00221 500 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 LDHCP07864 332 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 PRDX5P30044 214 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 FKBP1AP62942 108 aaKnown RBP18.54■□□□□ 0.56
UPF1-206ENST00000598471 USP17L1Q7RTZ2 530 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 SLF2Q8IX21 1173 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 OSBP2Q969R2 916 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 AIDAQ96BJ3 306 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 NSUN4Q96CB9 384 aaKnown RBP18.54■□□□□ 0.56
UPF1-206ENST00000598471 TBC1D32Q96NH3 1257 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 SEC62Q99442 399 aaKnown RBP18.54■□□□□ 0.56
UPF1-206ENST00000598471 USP26Q9BXU7 913 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 IL25Q9H293 177 aa18.54■□□□□ 0.56
UPF1-206ENST00000598471 M0R2C6 588 aa18.53■□□□□ 0.56
UPF1-206ENST00000598471 CHGBP05060 677 aa18.53■□□□□ 0.56
UPF1-206ENST00000598471 MECOMQ03112 1051 aa18.53■□□□□ 0.56
UPF1-206ENST00000598471 ZNF589Q86UQ0 364 aaPredicted RBP18.53■□□□□ 0.56
UPF1-206ENST00000598471 JDP2Q8WYK2 163 aa18.53■□□□□ 0.56
UPF1-206ENST00000598471 LSG1Q9H089 658 aaKnown RBP18.53■□□□□ 0.56
UPF1-206ENST00000598471 GPAA1O43292 621 aa18.52■□□□□ 0.56
UPF1-206ENST00000598471 SLFNL1Q499Z3 407 aa18.52■□□□□ 0.56
UPF1-206ENST00000598471 CCDC129Q6ZRS4 1044 aa18.52■□□□□ 0.56
UPF1-206ENST00000598471 NOL10Q9BSC4 688 aaKnown RBP18.52■□□□□ 0.56
UPF1-206ENST00000598471 PUS7LQ9H0K6 701 aaKnown RBP18.52■□□□□ 0.56
UPF1-206ENST00000598471 ZNRF3Q9ULT6 936 aa18.52■□□□□ 0.56
UPF1-206ENST00000598471 MYO5AQ9Y4I1 1855 aaKnown RBP18.52■□□□□ 0.55
UPF1-206ENST00000598471 MAGEB6P1A0A0J9YX57 407 aa18.51■□□□□ 0.55
UPF1-206ENST00000598471 GNAT2P19087 354 aa18.51■□□□□ 0.55
UPF1-206ENST00000598471 RBM25P49756 843 aaKnown RBP18.51■□□□□ 0.55
UPF1-206ENST00000598471 PRELPP51888 382 aa18.51■□□□□ 0.55
UPF1-206ENST00000598471 CERS3Q8IU89 383 aa18.51■□□□□ 0.55
UPF1-206ENST00000598471 DSCC1Q9BVC3 393 aa18.51■□□□□ 0.55
UPF1-206ENST00000598471 CCDC88AQ3V6T2 1871 aa18.51■□□□□ 0.55
UPF1-206ENST00000598471 MYO3BQ8WXR4 1341 aa18.5■□□□□ 0.55
UPF1-206ENST00000598471 GOLGB1Q14789 3259 aaKnown RBP18.5■□□□□ 0.55
UPF1-206ENST00000598471 MBD4O95243 580 aa18.5■□□□□ 0.55
UPF1-206ENST00000598471 RASSF7Q02833 373 aa18.5■□□□□ 0.55
UPF1-206ENST00000598471 DACT2Q5SW24 774 aa18.5■□□□□ 0.55
UPF1-206ENST00000598471 RBM19Q9Y4C8 960 aaKnown RBP18.5■□□□□ 0.55
UPF1-206ENST00000598471 U3KPZ7 1027 aaPredicted RBP18.5■□□□□ 0.55
UPF1-206ENST00000598471 PTH1RQ03431 593 aa18.49■□□□□ 0.55
UPF1-206ENST00000598471 MIGA1Q8NAN2 632 aa18.49■□□□□ 0.55
UPF1-206ENST00000598471 MAP4K1Q92918 833 aa18.49■□□□□ 0.55
UPF1-206ENST00000598471 CHD4Q14839 1912 aa18.49■□□□□ 0.55
UPF1-206ENST00000598471 MROH7-TTC4A0A0A0MT08 1334 aa18.49■□□□□ 0.55
UPF1-206ENST00000598471 YDJCA8MPS7 323 aa18.48■□□□□ 0.55
UPF1-206ENST00000598471 BAG3O95817 575 aa18.48■□□□□ 0.55
UPF1-206ENST00000598471 RNF20Q5VTR2 975 aa18.48■□□□□ 0.55
UPF1-206ENST00000598471 STRBPQ96SI9 672 aaKnown RBP18.48■□□□□ 0.55
UPF1-206ENST00000598471 TTF2Q9UNY4 1162 aaKnown RBP18.48■□□□□ 0.55
UPF1-206ENST00000598471 RBM8AQ9Y5S9 174 aaKnown RBP18.48■□□□□ 0.55
UPF1-206ENST00000598471 UTRNP46939 3433 aa18.48■□□□□ 0.55
UPF1-206ENST00000598471 RPAP1Q9BWH6 1393 aaPredicted RBP18.47■□□□□ 0.55
UPF1-206ENST00000598471 HSPD1P10809 573 aaKnown RBP18.47■□□□□ 0.55
UPF1-206ENST00000598471 HSPA4P34932 840 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 ANP32AP39687 249 aaKnown RBP18.47■□□□□ 0.55
UPF1-206ENST00000598471 ANAPC15P60006 121 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 GRIK5Q16478 980 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 CERS5Q8N5B7 392 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 ZNF384Q8TF68 577 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 ARMT1Q9H993 441 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 KCNQ5Q9NR82 932 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 CTNNA3Q9UI47 895 aa18.47■□□□□ 0.55
UPF1-206ENST00000598471 APPP05067 770 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 PLCG2P16885 1265 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 ZKSCAN1P17029 563 aaPredicted RBP18.46■□□□□ 0.55
UPF1-206ENST00000598471 LMNB1P20700 586 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 YY1P25490 414 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 TNIP1Q15025 636 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 DIXDC1Q155Q3 683 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 C9orf131Q5VYM1 1079 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 RSBN1LQ6PCB5 846 aaPredicted RBP18.46■□□□□ 0.55
UPF1-206ENST00000598471 ADGRA1Q86SQ6 560 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 LCORLQ8N3X6 602 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 FAM163AQ96GL9 167 aaPredicted RBP18.46■□□□□ 0.55
UPF1-206ENST00000598471 CRNKL1Q9BZJ0 848 aaKnown RBP18.46■□□□□ 0.55
UPF1-206ENST00000598471 NACAP1Q9BZK3 213 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 SLC4A4Q9Y6R1 1079 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 COL4A5P29400 1685 aa18.46■□□□□ 0.55
UPF1-206ENST00000598471 PSME4Q14997 1843 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 SCN9AQ15858 1988 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 F8W031 263 aaPredicted RBP18.45■□□□□ 0.54
UPF1-206ENST00000598471 RAD17O75943 681 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 VIL1P09327 827 aaKnown RBP18.45■□□□□ 0.54
UPF1-206ENST00000598471 EIF6P56537 245 aaKnown RBP18.45■□□□□ 0.54
UPF1-206ENST00000598471 HDLBPQ00341 1268 aaKnown RBP18.45■□□□□ 0.54
UPF1-206ENST00000598471 VPS53Q5VIR6 699 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 CIAPIN1Q6FI81 312 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 TEKT1Q969V4 418 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 RIOK1Q9BRS2 568 aaKnown RBP18.45■□□□□ 0.54
UPF1-206ENST00000598471 MXD3Q9BW11 206 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 AATFQ9NY61 560 aaKnown RBP eCLIP18.45■□□□□ 0.54
UPF1-206ENST00000598471 GAKO14976 1311 aa18.45■□□□□ 0.54
UPF1-206ENST00000598471 PATL2C9JE40 543 aaKnown RBP18.44■□□□□ 0.54
UPF1-206ENST00000598471 PSMD14O00487 310 aa18.44■□□□□ 0.54
UPF1-206ENST00000598471 PPP4CP60510 307 aa18.44■□□□□ 0.54
UPF1-206ENST00000598471 KIAA0825Q8IV33 1275 aa18.44■□□□□ 0.54
UPF1-206ENST00000598471 DDRGK1Q96HY6 314 aa18.44■□□□□ 0.54
UPF1-206ENST00000598471 MRIQ9BWK5 157 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms