RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 NAA16Q6N069 864 aaPredicted RBP17.62■□□□□ 0.41
VRK3-212ENST00000596814 TMED8Q6PL24 325 aaPredicted RBP17.62■□□□□ 0.41
VRK3-212ENST00000596814 CCDC129Q6ZRS4 1044 aa17.62■□□□□ 0.41
VRK3-212ENST00000596814 NIM1KQ8IY84 436 aa17.62■□□□□ 0.41
VRK3-212ENST00000596814 NSUN4Q96CB9 384 aaKnown RBP17.62■□□□□ 0.41
VRK3-212ENST00000596814 CYP7A1P22680 504 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 RASSF7Q02833 373 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 MECOMQ03112 1051 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 C22orf23Q9BZE7 217 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 LSG1Q9H089 658 aaKnown RBP17.61■□□□□ 0.41
VRK3-212ENST00000596814 PUS7LQ9H0K6 701 aaKnown RBP17.61■□□□□ 0.41
VRK3-212ENST00000596814 EPB41L2O43491 1005 aaKnown RBP17.61■□□□□ 0.41
VRK3-212ENST00000596814 STRIP1Q5VSL9 837 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 TBC1D32Q96NH3 1257 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 USP26Q9BXU7 913 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 SUGT1Q9Y2Z0 365 aa17.61■□□□□ 0.41
VRK3-212ENST00000596814 MYH2Q9UKX2 1941 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 USP17L3A6NCW0 530 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 USP17L4A6NCW7 530 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 YDJCA8MPS7 323 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 GPAA1O43292 621 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 GRIK5Q16478 980 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 USP17L1Q7RTZ2 530 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 ZNF384Q8TF68 577 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 KCNQ5Q9NR82 932 aa17.6■□□□□ 0.41
VRK3-212ENST00000596814 FKBP1AP62942 108 aaKnown RBP17.59■□□□□ 0.41
VRK3-212ENST00000596814 GSTO1P78417 241 aa17.59■□□□□ 0.41
VRK3-212ENST00000596814 AIDAQ96BJ3 306 aa17.59■□□□□ 0.41
VRK3-212ENST00000596814 PTH1RQ03431 593 aa17.58■□□□□ 0.41
VRK3-212ENST00000596814 DACT2Q5SW24 774 aa17.58■□□□□ 0.41
VRK3-212ENST00000596814 ADGRA1Q86SQ6 560 aa17.58■□□□□ 0.41
VRK3-212ENST00000596814 CERS5Q8N5B7 392 aa17.58■□□□□ 0.41
VRK3-212ENST00000596814 JDP2Q8WYK2 163 aa17.58■□□□□ 0.41
VRK3-212ENST00000596814 ZNRF3Q9ULT6 936 aa17.58■□□□□ 0.41
VRK3-212ENST00000596814 ARHGAP27Q6ZUM4 889 aa17.58■□□□□ 0.4
VRK3-212ENST00000596814 MIGA1Q8NAN2 632 aa17.58■□□□□ 0.4
VRK3-212ENST00000596814 MXD3Q9BW11 206 aa17.58■□□□□ 0.4
VRK3-212ENST00000596814 DICER1Q9UPY3 1922 aaKnown RBP17.57■□□□□ 0.4
VRK3-212ENST00000596814 MBD4O95243 580 aa17.57■□□□□ 0.4
VRK3-212ENST00000596814 MCCP23508 829 aa17.57■□□□□ 0.4
VRK3-212ENST00000596814 RBM25P49756 843 aaKnown RBP17.57■□□□□ 0.4
VRK3-212ENST00000596814 MAGEB6P1A0A0J9YX57 407 aa17.56■□□□□ 0.4
VRK3-212ENST00000596814 YBX3P16989 372 aaKnown RBP eCLIP17.56■□□□□ 0.44e-7■■□□□ 11.9
VRK3-212ENST00000596814 DIXDC1Q155Q3 683 aa17.56■□□□□ 0.4
VRK3-212ENST00000596814 SLF2Q8IX21 1173 aa17.56■□□□□ 0.4
VRK3-212ENST00000596814 DSCC1Q9BVC3 393 aa17.56■□□□□ 0.4
VRK3-212ENST00000596814 SBF1O95248 1867 aa17.56■□□□□ 0.4
VRK3-212ENST00000596814 MROH7-TTC4A0A0A0MT08 1334 aa17.56■□□□□ 0.4
VRK3-212ENST00000596814 RAD17O75943 681 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 LDHCP07864 332 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 HSPD1P10809 573 aaKnown RBP17.55■□□□□ 0.4
VRK3-212ENST00000596814 PRELPP51888 382 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 VPS53Q5VIR6 699 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 LCORLQ8N3X6 602 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 MAP4K1Q92918 833 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 STRBPQ96SI9 672 aaKnown RBP17.55■□□□□ 0.4
VRK3-212ENST00000596814 ARMT1Q9H993 441 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 TTF2Q9UNY4 1162 aaKnown RBP17.55■□□□□ 0.4
VRK3-212ENST00000596814 RBM19Q9Y4C8 960 aaKnown RBP17.55■□□□□ 0.4
VRK3-212ENST00000596814 RBM8AQ9Y5S9 174 aaKnown RBP17.55■□□□□ 0.4
VRK3-212ENST00000596814 MYO3BQ8WXR4 1341 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 ADAMTSL1Q8N6G6 1762 aa17.55■□□□□ 0.4
VRK3-212ENST00000596814 F8W031 263 aaPredicted RBP17.55■□□□□ 0.4
VRK3-212ENST00000596814 RIOK1Q9BRS2 568 aaKnown RBP17.55■□□□□ 0.4
VRK3-212ENST00000596814 PSMD14O00487 310 aa17.54■□□□□ 0.4
VRK3-212ENST00000596814 HSPA4P34932 840 aa17.54■□□□□ 0.4
VRK3-212ENST00000596814 RSBN1LQ6PCB5 846 aaPredicted RBP17.54■□□□□ 0.4
VRK3-212ENST00000596814 NOL10Q9BSC4 688 aaKnown RBP17.54■□□□□ 0.4
VRK3-212ENST00000596814 AATFQ9NY61 560 aaKnown RBP eCLIP17.54■□□□□ 0.4
VRK3-212ENST00000596814 U3KPZ7 1027 aaPredicted RBP17.54■□□□□ 0.4
VRK3-212ENST00000596814 VIL1P09327 827 aaKnown RBP17.53■□□□□ 0.4
VRK3-212ENST00000596814 GNAT2P19087 354 aa17.53■□□□□ 0.4
VRK3-212ENST00000596814 LMNB1P20700 586 aa17.53■□□□□ 0.4
VRK3-212ENST00000596814 DYNLL1P63167 89 aaKnown RBP17.53■□□□□ 0.4
VRK3-212ENST00000596814 KIAA0825Q8IV33 1275 aa17.53■□□□□ 0.4
VRK3-212ENST00000596814 GAKO14976 1311 aa17.53■□□□□ 0.4
VRK3-212ENST00000596814 TIAM2Q8IVF5 1701 aa17.53■□□□□ 0.4
VRK3-212ENST00000596814 FOXP2O15409 715 aa17.52■□□□□ 0.4
VRK3-212ENST00000596814 BAG3O95817 575 aa17.52■□□□□ 0.4
VRK3-212ENST00000596814 CXCL9Q07325 125 aa17.52■□□□□ 0.4
VRK3-212ENST00000596814 CIAPIN1Q6FI81 312 aa17.52■□□□□ 0.4
VRK3-212ENST00000596814 FAM163AQ96GL9 167 aaPredicted RBP17.52■□□□□ 0.4
VRK3-212ENST00000596814 SRCAPQ6ZRS2 3230 aa17.52■□□□□ 0.4
VRK3-212ENST00000596814 CERS3Q8IU89 383 aa17.52■□□□□ 0.39
VRK3-212ENST00000596814 SLC4A4Q9Y6R1 1079 aa17.52■□□□□ 0.39
VRK3-212ENST00000596814 LAMA4Q16363 1823 aa17.52■□□□□ 0.39
VRK3-212ENST00000596814 RPAP1Q9BWH6 1393 aaPredicted RBP17.51■□□□□ 0.39
VRK3-212ENST00000596814 APPP05067 770 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 BTDP43251 543 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 SCNN1DP51172 638 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 EIF6P56537 245 aaKnown RBP17.51■□□□□ 0.39
VRK3-212ENST00000596814 TNIP1Q15025 636 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 NECTIN1Q15223 517 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 TEKT1Q969V4 418 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 DAGLAQ9Y4D2 1042 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 CDK5RAP2Q96SN8 1893 aa17.51■□□□□ 0.39
VRK3-212ENST00000596814 GPR75-ASB3A0A0A6YYF3 556 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 PATL2C9JE40 543 aaKnown RBP17.5■□□□□ 0.39
VRK3-212ENST00000596814 FZD9O00144 591 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 ANAPC15P60006 121 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms