RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 BCAMP50895 628 aa15.67■□□□□ 0.1
UPF1-203ENST00000594504 VPS37DQ86XT2 251 aa15.67■□□□□ 0.1
UPF1-203ENST00000594504 VGLL2Q8N8G2 317 aa15.67■□□□□ 0.1
UPF1-203ENST00000594504 SMC4Q9NTJ3 1288 aa15.67■□□□□ 0.1
UPF1-203ENST00000594504 SERPINA10Q9UK55 444 aa15.67■□□□□ 0.1
UPF1-203ENST00000594504 PDE8BO95263 885 aa15.66■□□□□ 0.1
UPF1-203ENST00000594504 IREB2P48200 963 aaKnown RBP15.66■□□□□ 0.1
UPF1-203ENST00000594504 PKN2Q16513 984 aaKnown RBP15.66■□□□□ 0.1
UPF1-203ENST00000594504 TEPSINQ96N21 525 aa15.66■□□□□ 0.1
UPF1-203ENST00000594504 CFHR5Q9BXR6 569 aa15.66■□□□□ 0.1
UPF1-203ENST00000594504 TMEM39BQ9GZU3 492 aa15.66■□□□□ 0.1
UPF1-203ENST00000594504 ELP3Q9H9T3 547 aa15.66■□□□□ 0.1
UPF1-203ENST00000594504 PTPRCP08575 1304 aa15.66■□□□□ 0.1
UPF1-203ENST00000594504 FRAT2O75474 233 aaPredicted RBP15.65■□□□□ 0.1
UPF1-203ENST00000594504 ZBTB48P10074 688 aaPredicted RBP15.65■□□□□ 0.1
UPF1-203ENST00000594504 CACNB3P54284 484 aa15.65■□□□□ 0.1
UPF1-203ENST00000594504 INHBEP58166 350 aa15.65■□□□□ 0.1
UPF1-203ENST00000594504 CAVIN4Q5BKX8 364 aa15.65■□□□□ 0.1
UPF1-203ENST00000594504 NOM1Q5C9Z4 860 aaKnown RBP15.65■□□□□ 0.1
UPF1-203ENST00000594504 ANKRD13AQ8IZ07 590 aa15.65■□□□□ 0.1
UPF1-203ENST00000594504 CNKSR2Q8WXI2 1034 aa15.65■□□□□ 0.1
UPF1-203ENST00000594504 PTPN18Q99952 460 aa15.65■□□□□ 0.1
UPF1-203ENST00000594504 ALDH1A1P00352 501 aa15.64■□□□□ 0.09
UPF1-203ENST00000594504 RFX5P48382 616 aaPredicted RBP15.64■□□□□ 0.09
UPF1-203ENST00000594504 RARSP54136 660 aaKnown RBP15.64■□□□□ 0.09
UPF1-203ENST00000594504 ARAP2Q8WZ64 1704 aa15.63■□□□□ 0.09
UPF1-203ENST00000594504 FGFR2P21802 821 aa15.63■□□□□ 0.09
UPF1-203ENST00000594504 TNFAIP1Q13829 316 aa15.63■□□□□ 0.09
UPF1-203ENST00000594504 FBXO46Q6PJ61 603 aaPredicted RBP15.63■□□□□ 0.09
UPF1-203ENST00000594504 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.63■□□□□ 0.09
UPF1-203ENST00000594504 OPTNQ96CV9 577 aa15.63■□□□□ 0.09
UPF1-203ENST00000594504 OTOFQ9HC10 1997 aa15.62■□□□□ 0.09
UPF1-203ENST00000594504 UNCXA6NJT0 531 aa15.62■□□□□ 0.09
UPF1-203ENST00000594504 TRIM17Q9Y577 477 aa15.62■□□□□ 0.09
UPF1-203ENST00000594504 EYA2O00167 538 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 IFIT1P09914 478 aaKnown RBP15.61■□□□□ 0.09
UPF1-203ENST00000594504 TNNI2P48788 182 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 MAP3K9P80192 1104 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 CAP1Q01518 475 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 CRHR2Q13324 411 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 ATG9AQ7Z3C6 839 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 CD99L2Q8TCZ2 262 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 TBC1D22AQ8WUA7 517 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 MS4A4AQ96JQ5 239 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 NOB1Q9ULX3 412 aaKnown RBP15.61■□□□□ 0.09
UPF1-203ENST00000594504 KIF16BQ96L93 1317 aa15.61■□□□□ 0.09
UPF1-203ENST00000594504 LAMB1P07942 1786 aa15.6■□□□□ 0.09
UPF1-203ENST00000594504 TESPA1A2RU30 521 aaPredicted RBP15.6■□□□□ 0.09
UPF1-203ENST00000594504 HDLBPQ00341 1268 aaKnown RBP15.6■□□□□ 0.09
UPF1-203ENST00000594504 VGLL4Q14135 290 aa15.6■□□□□ 0.09
UPF1-203ENST00000594504 PUM3Q15397 648 aaKnown RBP15.6■□□□□ 0.09
UPF1-203ENST00000594504 APOBEC3HQ6NTF7 200 aaKnown RBP15.6■□□□□ 0.09
UPF1-203ENST00000594504 OTOP1Q7RTM1 612 aa15.6■□□□□ 0.09
UPF1-203ENST00000594504 TEKT1Q969V4 418 aa15.6■□□□□ 0.09
UPF1-203ENST00000594504 SIL1Q9H173 461 aa15.6■□□□□ 0.09
UPF1-203ENST00000594504 OTUD7BQ6GQQ9 843 aa15.59■□□□□ 0.09
UPF1-203ENST00000594504 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.59■□□□□ 0.09
UPF1-203ENST00000594504 ZDHHC15Q96MV8 337 aa15.59■□□□□ 0.09
UPF1-203ENST00000594504 SLC5A1P13866 664 aa15.58■□□□□ 0.08
UPF1-203ENST00000594504 BRI3BPQ8WY22 251 aa15.58■□□□□ 0.08
UPF1-203ENST00000594504 ZKSCAN4Q969J2 545 aaPredicted RBP15.58■□□□□ 0.08
UPF1-203ENST00000594504 OTUD5Q96G74 571 aa15.58■□□□□ 0.08
UPF1-203ENST00000594504 MRIQ9BWK5 157 aa15.58■□□□□ 0.08
UPF1-203ENST00000594504 API5Q9BZZ5 524 aaKnown RBP15.58■□□□□ 0.08
UPF1-203ENST00000594504 SLC34A2O95436 690 aa15.57■□□□□ 0.08
UPF1-203ENST00000594504 UBTFL1P0CB47 393 aaPredicted RBP15.57■□□□□ 0.08
UPF1-203ENST00000594504 SP3Q02447 781 aa15.57■□□□□ 0.08
UPF1-203ENST00000594504 MIGA2Q7L4E1 593 aa15.57■□□□□ 0.08
UPF1-203ENST00000594504 LPIN2Q92539 896 aa15.57■□□□□ 0.08
UPF1-203ENST00000594504 ARHGAP45Q92619 1136 aa15.57■□□□□ 0.08
UPF1-203ENST00000594504 PA2G4Q9UQ80 394 aaKnown RBP15.57■□□□□ 0.08
UPF1-203ENST00000594504 CSADQ9Y600 493 aa15.57■□□□□ 0.08
UPF1-203ENST00000594504 CCL15-CCL14A0A0B4J2E2 113 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 IPO8O15397 1037 aaKnown RBP15.56■□□□□ 0.08
UPF1-203ENST00000594504 BCAR3O75815 825 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 DIXDC1Q155Q3 683 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 CCL15Q16663 113 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 HHIPL2Q6UWX4 724 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 FAM43AQ8N2R8 423 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 ERO1AQ96HE7 468 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 TMOD2Q9NZR1 351 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 PTPN22Q9Y2R2 807 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 LRRFIP2Q9Y608 721 aaKnown RBP15.56■□□□□ 0.08
UPF1-203ENST00000594504 SNCAIPQ9Y6H5 919 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 MYH13Q9UKX3 1938 aa15.56■□□□□ 0.08
UPF1-203ENST00000594504 POTEFA5A3E0 1075 aa15.55■□□□□ 0.08
UPF1-203ENST00000594504 GTF2A2P52657 109 aa15.55■□□□□ 0.08
UPF1-203ENST00000594504 TCP10Q12799 353 aa15.55■□□□□ 0.08
UPF1-203ENST00000594504 TAF1CQ15572 869 aaPredicted RBP15.55■□□□□ 0.08
UPF1-203ENST00000594504 WDR66Q8TBY9 1149 aa15.55■□□□□ 0.08
UPF1-203ENST00000594504 WRNIP1Q96S55 665 aa15.55■□□□□ 0.08
UPF1-203ENST00000594504 CEP126Q9P2H0 1117 aa15.55■□□□□ 0.08
UPF1-203ENST00000594504 SUGT1Q9Y2Z0 365 aa15.55■□□□□ 0.08
UPF1-203ENST00000594504 MAST3O60307 1309 aa15.54■□□□□ 0.08
UPF1-203ENST00000594504 PRDX5P30044 214 aa15.54■□□□□ 0.08
UPF1-203ENST00000594504 ATP2B3Q16720 1220 aa15.54■□□□□ 0.08
UPF1-203ENST00000594504 CDC42EP5Q6NZY7 148 aa15.54■□□□□ 0.08
UPF1-203ENST00000594504 FAM83AQ86UY5 434 aa15.54■□□□□ 0.08
UPF1-203ENST00000594504 MEIS3Q99687 375 aa15.54■□□□□ 0.08
UPF1-203ENST00000594504 EFCC1Q9HA90 598 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms