RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	NR1I2	O75469	434 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	CYLC1	P35663	651 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	LMAN1	P49257	510 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	MAP3K12	Q12852	859 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	MPRIP	Q6WCQ1	1025 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	RASEF	Q8IZ41	740 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	KCNB2	Q92953	911 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	SLC26A8	Q96RN1	970 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	BICC1	Q9H694	974 aa	Known RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	COPRS	Q9NQ92	184 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	MYO1A	Q9UBC5	1043 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	ZNF215	Q9UL58	517 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	ADCY9	O60503	1353 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	TMEM131L	A2VDJ0	1609 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	PRC1	O43663	620 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	ZNF202	O95125	648 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	NBPF7	P0C2Y1	421 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	PAFAH1B1	P43034	410 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	PTH1R	Q03431	593 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	IFIT5	Q13325	482 aa	Known RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	FKBP15	Q5T1M5	1219 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	C17orf53	Q8N3J3	647 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	ALS2CR12	Q96Q35	445 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	HAUS7	Q99871	368 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	NAPB	Q9H115	298 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	MED4	Q9NPJ6	270 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	ZNF330	Q9Y3S2	320 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	RTL9	Q8NET4	1388 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	WDR19	Q8NEZ3	1342 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790		A0A1B0GUL7	405 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	PPP6R2	O75170	966 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	CALM1	P0DP23	149 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	CALM2	P0DP24	149 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	CALM3	P0DP25	149 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	LMOD1	P29536	600 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	APOBR	Q0VD83	1088 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	REST	Q13127	1097 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	TERF2	Q15554	542 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	WHAMMP3	Q1A5X7	153 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	TTLL5	Q6EMB2	1281 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	TMTC1	Q8IUR5	882 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	GOLGA5	Q8TBA6	731 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	CACTIN	Q8WUQ7	758 aa	Known RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	NUP88	Q99567	741 aa	Predicted RBP	4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	TSGA10	Q9BZW7	698 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	CD163L1	Q9NR16	1453 aa		4.03	□□□□□ -1.76
VMP1-216	ENST00000592790	OVOS2	A0A0J9YW53	1432 aa		4.03	□□□□□ -1.77
VMP1-216	ENST00000592790	OVOS2	Q6IE36	1432 aa		4.03	□□□□□ -1.77
VMP1-216	ENST00000592790	GOLGA6L7	A0A1B0GV03	622 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	BIN1	O00499	593 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	KRT86	O43790	486 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	TAF5L	O75529	589 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	POLR3D	P05423	398 aa	Predicted RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CPA1	P15085	419 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	ATF3	P18847	181 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	TDO2	P48775	406 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	EIF5	P55010	431 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CHMP4BP1	P59074	171 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	GUCY1B3	Q02153	619 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	SF3B2	Q13435	895 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	TMEM67	Q5HYA8	995 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	SPECC1L	Q69YQ0	1117 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	RBM43	Q6ZSC3	357 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	UBE3B	Q7Z3V4	1068 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	SPATS2	Q86XZ4	545 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	UNC5CL	Q8IV45	518 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CEP120	Q8N960	986 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC191	Q8NCU4	936 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	DDX54	Q8TDD1	881 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	PPM1E	Q8WY54	764 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	EXOC4	Q96A65	974 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	FAM227B	Q96M60	508 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	LRRC27	Q9C0I9	530 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	SALL3	Q9BXA9	1300 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	IFIT3	O14879	490 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	MARCH6	O60337	910 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CAPN2	P17655	700 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	HOXA7	P31268	230 aa	Predicted RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	AMPD3	Q01432	767 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC178	Q5BJE1	867 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	METTL24	Q5JXM2	366 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	MYSM1	Q5VVJ2	828 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	DDX46	Q7L014	1031 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	IL17RE	Q8NFR9	667 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	XAGE3	Q8WTP9	111 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	SECISBP2L	Q93073	1101 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	PPP1R13B	Q96KQ4	1090 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	UTP14A	Q9BVJ6	771 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	XPO4	Q9C0E2	1151 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	PA2G4	Q9UQ80	394 aa	Known RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC151	A5D8V7	595 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	STARD3NL	O95772	234 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	SLC5A1	P13866	664 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	LRMP	Q12912	555 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	GCKR	Q14397	625 aa		4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	TTC31	Q49AM3	519 aa	Predicted RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	TMED8	Q6PL24	325 aa	Predicted RBP	4.02	□□□□□ -1.77
VMP1-216	ENST00000592790	IQCA1	Q86XH1	822 aa		4.02	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms