RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 CYP21A2P08686 494 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 MSNP26038 577 aaKnown RBP12.49□□□□□ -0.41
ZNF540-208ENST00000589857 NAA16Q6N069 864 aaPredicted RBP12.49□□□□□ -0.41
ZNF540-208ENST00000589857 CHADLQ6NUI6 762 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 LDHAL6AQ6ZMR3 332 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 ZSCAN30Q86W11 494 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 DZIP3Q86Y13 1208 aaKnown RBP12.49□□□□□ -0.41
ZNF540-208ENST00000589857 ZNF622Q969S3 477 aaKnown RBP eCLIP12.49□□□□□ -0.41
ZNF540-208ENST00000589857 ZNF274Q96GC6 653 aaPredicted RBP12.49□□□□□ -0.41
ZNF540-208ENST00000589857 RBSNQ9H1K0 784 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 CFAP45Q9UL16 551 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 TBC1D2BQ9UPU7 963 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 MAST3O60307 1309 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 HSPD1P10809 573 aaKnown RBP12.48□□□□□ -0.41
ZNF540-208ENST00000589857 ITGA6P23229 1130 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 FKBP4Q02790 459 aaKnown RBP eCLIP12.48□□□□□ -0.41
ZNF540-208ENST00000589857 WASHC4Q2M389 1173 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 NECAB1Q8N987 351 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 TTLL11Q8NHH1 800 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 CNKSR2Q8WXI2 1034 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 CNKSR1Q969H4 720 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 FAM89AQ96GI7 184 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 ZNF594Q96JF6 807 aaPredicted RBP12.48□□□□□ -0.41
ZNF540-208ENST00000589857 PDLIM2Q96JY6 352 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 BRIP1Q9BX63 1249 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 AGXT2Q9BYV1 514 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 DDX19AQ9NUU7 478 aaKnown RBP12.48□□□□□ -0.41
ZNF540-208ENST00000589857 ZNF652Q9Y2D9 606 aa12.48□□□□□ -0.41
ZNF540-208ENST00000589857 SLC5A1P13866 664 aa12.47□□□□□ -0.41
ZNF540-208ENST00000589857 PUM3Q15397 648 aaKnown RBP12.47□□□□□ -0.41
ZNF540-208ENST00000589857 CCDC129Q6ZRS4 1044 aa12.47□□□□□ -0.41
ZNF540-208ENST00000589857 RALYLQ86SE5 291 aaKnown RBP12.47□□□□□ -0.41
ZNF540-208ENST00000589857 LPIN2Q92539 896 aa12.47□□□□□ -0.41
ZNF540-208ENST00000589857 ZNF396Q96N95 335 aaPredicted RBP12.47□□□□□ -0.41
ZNF540-208ENST00000589857 LARP6Q9BRS8 491 aaKnown RBP12.47□□□□□ -0.41
ZNF540-208ENST00000589857 TAOK3Q9H2K8 898 aa12.47□□□□□ -0.41
ZNF540-208ENST00000589857 RIPOR2Q9Y4F9 1068 aa12.47□□□□□ -0.41
ZNF540-208ENST00000589857 COL5A3P25940 1745 aaPredicted RBP12.47□□□□□ -0.41
ZNF540-208ENST00000589857 BRCA1P38398 1863 aaKnown RBP12.46□□□□□ -0.41
ZNF540-208ENST00000589857 E7EWF7 191 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 EXOSC10Q01780 885 aaKnown RBP12.46□□□□□ -0.41
ZNF540-208ENST00000589857 DNM1Q05193 864 aaKnown RBP12.46□□□□□ -0.41
ZNF540-208ENST00000589857 ST3GAL1Q11201 340 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 TRDNQ13061 729 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 UBE3CQ15386 1083 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 ZNF34Q8IZ26 560 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 SMARCC2Q8TAQ2 1214 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 BRF1Q92994 677 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 SPATA32Q96LK8 384 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 SEC62Q99442 399 aaKnown RBP12.46□□□□□ -0.41
ZNF540-208ENST00000589857 UTP14AQ9BVJ6 771 aaKnown RBP12.46□□□□□ -0.41
ZNF540-208ENST00000589857 PUS3Q9BZE2 481 aaKnown RBP12.46□□□□□ -0.41
ZNF540-208ENST00000589857 PRDM10Q9NQV6 1147 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 ZBTB1Q9Y2K1 713 aa12.46□□□□□ -0.41
ZNF540-208ENST00000589857 RIC1Q4ADV7 1423 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 RTL9Q8NET4 1388 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 LTBP3Q9NS15 1303 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 GADD45BO75293 160 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-208ENST00000589857 PDE8BO95263 885 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 CAVIN2O95810 425 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 CCDC192P0DO97 292 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 ARID4AP29374 1257 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-208ENST00000589857 ST5P78524 1137 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 FOXD4L6Q3SYB3 417 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-208ENST00000589857 CCDC152Q4G0S7 254 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 FOXD4L3Q6VB84 417 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-208ENST00000589857 BICDL1Q6ZP65 573 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 NCOA7Q8NI08 942 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 GDPD2Q9HCC8 539 aa12.45□□□□□ -0.42
ZNF540-208ENST00000589857 RRAGDQ9NQL2 400 aaPredicted RBP12.45□□□□□ -0.42
ZNF540-208ENST00000589857 ZMYM6O95789 1325 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 ZNF213O14771 459 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 C21orf2O43822 256 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 TPM3P06753 285 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 GPTP24298 496 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 CTCFP49711 727 aaPredicted RBP12.44□□□□□ -0.42
ZNF540-208ENST00000589857 EIF5P55010 431 aaKnown RBP12.44□□□□□ -0.42
ZNF540-208ENST00000589857 EVCP57679 992 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 STK3Q13188 491 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 CPLX2Q6PUV4 134 aaKnown RBP12.44□□□□□ -0.42
ZNF540-208ENST00000589857 CDC37L1Q7L3B6 337 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 LDHDQ86WU2 507 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 SETDB2Q96T68 719 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 MPHOSPH8Q99549 860 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 GREM2Q9H772 168 aa12.44□□□□□ -0.42
ZNF540-208ENST00000589857 MKRN1Q9UHC7 482 aaKnown RBP12.44□□□□□ -0.42
ZNF540-208ENST00000589857 NSFL1CQ9UNZ2 370 aaKnown RBP12.44□□□□□ -0.42
ZNF540-208ENST00000589857 CARMIL3Q8ND23 1372 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 M0R2C6 588 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 NFKBIEO00221 500 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 CDKL5O76039 1030 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 PTMAP06454 111 aaKnown RBP12.43□□□□□ -0.42
ZNF540-208ENST00000589857 ADORA1P30542 326 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 IGHMBP2P38935 993 aaKnown RBP12.43□□□□□ -0.42
ZNF540-208ENST00000589857 ZAP70P43403 619 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 MAP3K12Q12852 859 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 HLFQ16534 295 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 MAP3K11Q16584 847 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 STYK1Q6J9G0 422 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 OSBP2Q969R2 916 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms