RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 DPY19L2Q6NUT2 758 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 GPT2Q8TD30 523 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 FOXD4L4Q8WXT5 416 aaPredicted RBP11.79□□□□□ -0.52
VPS25-202ENST00000589219 APPBP2Q92624 585 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 MASTLQ96GX5 879 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 SEC62Q99442 399 aaKnown RBP11.79□□□□□ -0.52
VPS25-202ENST00000589219 UTP14AQ9BVJ6 771 aaKnown RBP11.79□□□□□ -0.52
VPS25-202ENST00000589219 CTNNA3Q9UI47 895 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 TIAM2Q8IVF5 1701 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 DDX60Q8IY21 1712 aaKnown RBP11.78□□□□□ -0.52
VPS25-202ENST00000589219 NFKBIEO00221 500 aa11.78□□□□□ -0.52
VPS25-202ENST00000589219 C21orf2O43822 256 aa11.78□□□□□ -0.52
VPS25-202ENST00000589219 SRGNP10124 158 aa11.78□□□□□ -0.52
VPS25-202ENST00000589219 VEGFAP15692 232 aaPredicted RBP11.78□□□□□ -0.52
VPS25-202ENST00000589219 ARID4AP29374 1257 aaPredicted RBP11.78□□□□□ -0.52
VPS25-202ENST00000589219 PUM3Q15397 648 aaKnown RBP11.78□□□□□ -0.52
VPS25-202ENST00000589219 TPTE2Q6XPS3 522 aa11.78□□□□□ -0.52
VPS25-202ENST00000589219 CCDC24Q8N4L8 307 aa11.78□□□□□ -0.52
VPS25-202ENST00000589219 GTF3C6Q969F1 213 aa11.78□□□□□ -0.52
VPS25-202ENST00000589219 MTMR6Q9Y217 621 aa11.78□□□□□ -0.52
VPS25-202ENST00000589219 WDR90Q96KV7 1748 aa11.77□□□□□ -0.52
VPS25-202ENST00000589219 PDE8BO95263 885 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 HSPD1P10809 573 aaKnown RBP11.77□□□□□ -0.53
VPS25-202ENST00000589219 SLC5A1P13866 664 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 FKBP4Q02790 459 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS25-202ENST00000589219 CCDC152Q4G0S7 254 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 DHX32Q7L7V1 743 aaKnown RBP11.77□□□□□ -0.53
VPS25-202ENST00000589219 SMC1BQ8NDV3 1235 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 LPIN2Q92539 896 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 CCDC85AQ96PX6 553 aaPredicted RBP11.77□□□□□ -0.53
VPS25-202ENST00000589219 LLPHQ9BRT6 129 aaKnown RBP11.77□□□□□ -0.53
VPS25-202ENST00000589219 NIP7Q9Y221 180 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS25-202ENST00000589219 KIF3AQ9Y496 699 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 TAF6LQ9Y6J9 622 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 LTBP3Q9NS15 1303 aa11.77□□□□□ -0.53
VPS25-202ENST00000589219 SLX4Q8IY92 1834 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 MYH7P12883 1935 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 M0R2C6 588 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 NTSR2O95665 410 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 NPR1P16066 1061 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 GTF2E1P29083 439 aaPredicted RBP11.76□□□□□ -0.53
VPS25-202ENST00000589219 ZAP70P43403 619 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 UBE2HP62256 183 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 ERFEQ4G0M1 354 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 LRSAM1Q6UWE0 723 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 Q6ZUG5 572 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 GAS2L3Q86XJ1 694 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 FAM43AQ8N2R8 423 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 FBXL16Q8N461 479 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 ANP32BQ92688 251 aaKnown RBP11.76□□□□□ -0.53
VPS25-202ENST00000589219 LARP6Q9BRS8 491 aaKnown RBP11.76□□□□□ -0.53
VPS25-202ENST00000589219 AGXT2Q9BYV1 514 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 TAOK3Q9H2K8 898 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 WDR19Q8NEZ3 1342 aa11.76□□□□□ -0.53
VPS25-202ENST00000589219 VPS37CA5D8V6 355 aaPredicted RBP11.75□□□□□ -0.53
VPS25-202ENST00000589219 PFKFB2O60825 505 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 FGFR2P21802 821 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 NASPP49321 788 aaPredicted RBP11.75□□□□□ -0.53
VPS25-202ENST00000589219 PRELPP51888 382 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 HMGN5P82970 282 aaKnown RBP11.75□□□□□ -0.53
VPS25-202ENST00000589219 FGD1P98174 961 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 CCDC173Q0VFZ6 552 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 UBE3CQ15386 1083 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 IMMTQ16891 758 aaKnown RBP11.75□□□□□ -0.53
VPS25-202ENST00000589219 WASHC4Q2M389 1173 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 SUSD4Q5VX71 490 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 LARP1BQ659C4 914 aaKnown RBP11.75□□□□□ -0.53
VPS25-202ENST00000589219 STOX1Q6ZVD7 989 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 SYNE4Q8N205 404 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 NECAB1Q8N987 351 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 OSBP2Q969R2 916 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 PANK2Q9BZ23 570 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 NYXQ9GZU5 481 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 TMEM63CQ9P1W3 806 aa11.75□□□□□ -0.53
VPS25-202ENST00000589219 KLRG2A4D1S0 409 aaPredicted RBP11.74□□□□□ -0.53
VPS25-202ENST00000589219 E7EWF7 191 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 ZBTB22O15209 634 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 LETM1O95202 739 aaPredicted RBP11.74□□□□□ -0.53
VPS25-202ENST00000589219 CHGBP05060 677 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 ALDH1B1P30837 517 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 ADD2P35612 726 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 IGHMBP2P38935 993 aaKnown RBP11.74□□□□□ -0.53
VPS25-202ENST00000589219 MCAMP43121 646 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 KRT85P78386 507 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 SCARF1Q14162 830 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 USP48Q86UV5 1035 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 DNAJC5GQ8N7S2 189 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 TCEANC2Q96MN5 208 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 ELP1O95163 1332 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 ZMYM6O95789 1325 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 LAMA4Q16363 1823 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 DOCK2Q92608 1830 aa11.74□□□□□ -0.53
VPS25-202ENST00000589219 GPAA1O43292 621 aa11.73□□□□□ -0.53
VPS25-202ENST00000589219 EXOSC10Q01780 885 aaKnown RBP11.73□□□□□ -0.53
VPS25-202ENST00000589219 CCDC93Q567U6 631 aa11.73□□□□□ -0.53
VPS25-202ENST00000589219 CCDC183Q5T5S1 534 aa11.73□□□□□ -0.53
VPS25-202ENST00000589219 CCDC102BQ68D86 513 aa11.73□□□□□ -0.53
VPS25-202ENST00000589219 SMARCC2Q8TAQ2 1214 aa11.73□□□□□ -0.53
VPS25-202ENST00000589219 BRF1Q92994 677 aa11.73□□□□□ -0.53
VPS25-202ENST00000589219 CDC5LQ99459 802 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms