RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ANKRD44Q8N8A2 993 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 VGLL2Q8N8G2 317 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 TBC1D22AQ8WUA7 517 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 TEPSINQ96N21 525 aa14.95□□□□□ -0.02
LIG3-209ENST00000586435 TDRD3Q9H7E2 651 aaKnown RBP14.95□□□□□ -0.02
LIG3-209ENST00000586435 KIF16BQ96L93 1317 aa14.94□□□□□ -0.02
LIG3-209ENST00000586435 PRPF38BQ5VTL8 546 aaKnown RBP14.94□□□□□ -0.02
LIG3-209ENST00000586435 PDE8BO95263 885 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 TNNI2P48788 182 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 LRRC24Q50LG9 513 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 CAVIN4Q5BKX8 364 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 METTL24Q5JXM2 366 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 OTOP1Q7RTM1 612 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 VPS37DQ86XT2 251 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 ERO1AQ96HE7 468 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 TRIM17Q9Y577 477 aa14.93□□□□□ -0.02
LIG3-209ENST00000586435 KIAA0100Q14667 2235 aaKnown RBP14.93□□□□□ -0.02
LIG3-209ENST00000586435 CRHR2Q13324 411 aa14.92□□□□□ -0.02
LIG3-209ENST00000586435 OPTNQ96CV9 577 aa14.92□□□□□ -0.02
LIG3-209ENST00000586435 MRIQ9BWK5 157 aa14.92□□□□□ -0.02
LIG3-209ENST00000586435 SUGT1Q9Y2Z0 365 aa14.92□□□□□ -0.02
LIG3-209ENST00000586435 MAST3O60307 1309 aa14.92□□□□□ -0.02
LIG3-209ENST00000586435 HTTP42858 3142 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 RPAP1Q9BWH6 1393 aaPredicted RBP14.91□□□□□ -0.02
LIG3-209ENST00000586435 TCP10L2B9ZVM9 353 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 E9PSI1 815 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 GRIK5Q16478 980 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 INTS3Q68E01 1043 aaKnown RBP14.91□□□□□ -0.02
LIG3-209ENST00000586435 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.91□□□□□ -0.02
LIG3-209ENST00000586435 CDAN1Q8IWY9 1227 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.91□□□□□ -0.02
LIG3-209ENST00000586435 TEKT1Q969V4 418 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 MS4A4AQ96JQ5 239 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 PTPN18Q99952 460 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 TMEM39BQ9GZU3 492 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 ELP3Q9H9T3 547 aa14.91□□□□□ -0.02
LIG3-209ENST00000586435 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.91□□□□□ -0.02
LIG3-209ENST00000586435 FGFR2P21802 821 aa14.9□□□□□ -0.02
LIG3-209ENST00000586435 MAP3K9P80192 1104 aa14.9□□□□□ -0.02
LIG3-209ENST00000586435 VGLL4Q14135 290 aa14.9□□□□□ -0.02
LIG3-209ENST00000586435 PUM3Q15397 648 aaKnown RBP14.9□□□□□ -0.02
LIG3-209ENST00000586435 FKBP1CQ5VVH2 108 aa14.9□□□□□ -0.02
LIG3-209ENST00000586435 ZDHHC15Q96MV8 337 aa14.9□□□□□ -0.02
LIG3-209ENST00000586435 USP44Q9H0E7 712 aa14.9□□□□□ -0.02
LIG3-209ENST00000586435 IQSEC3Q9UPP2 1182 aaPredicted RBP14.9□□□□□ -0.02
LIG3-209ENST00000586435 FRAT2O75474 233 aaPredicted RBP14.89□□□□□ -0.03
LIG3-209ENST00000586435 IFIT1P09914 478 aaKnown RBP14.89□□□□□ -0.03
LIG3-209ENST00000586435 GTF2A2P52657 109 aa14.89□□□□□ -0.03
LIG3-209ENST00000586435 SP3Q02447 781 aa14.89□□□□□ -0.03
LIG3-209ENST00000586435 CHAF1AQ13111 956 aaPredicted RBP14.89□□□□□ -0.03
LIG3-209ENST00000586435 FAM83AQ86UY5 434 aa14.89□□□□□ -0.03
LIG3-209ENST00000586435 SSH1Q8WYL5 1049 aa14.89□□□□□ -0.03
LIG3-209ENST00000586435 PTPN22Q9Y2R2 807 aa14.89□□□□□ -0.03
LIG3-209ENST00000586435 CSADQ9Y600 493 aa14.89□□□□□ -0.03
LIG3-209ENST00000586435 SPDYE5A6NIY4 337 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 RFX5P48382 616 aaPredicted RBP14.88□□□□□ -0.03
LIG3-209ENST00000586435 BCAMP50895 628 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 ALDH1L2Q3SY69 923 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 HHIPL2Q6UWX4 724 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 KLHDC4Q8TBB5 520 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 CD99L2Q8TCZ2 262 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 BRI3BPQ8WY22 251 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 HOOK2Q96ED9 719 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 TMOD2Q9NZR1 351 aa14.88□□□□□ -0.03
LIG3-209ENST00000586435 CCL15-CCL14A0A0B4J2E2 113 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 EYA2O00167 538 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 SLFN5Q08AF3 891 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 CCL15Q16663 113 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 APOBEC3HQ6NTF7 200 aaKnown RBP14.87□□□□□ -0.03
LIG3-209ENST00000586435 CNKSR2Q8WXI2 1034 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 ARMC5Q96C12 935 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 EFCC1Q9HA90 598 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 ZCCHC17Q9NP64 241 aaKnown RBP14.87□□□□□ -0.03
LIG3-209ENST00000586435 PCDH10Q9P2E7 1040 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 FBXO3Q9UK99 471 aa14.87□□□□□ -0.03
LIG3-209ENST00000586435 AK9Q5TCS8 1911 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 SLC5A1P13866 664 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 CACNB3P54284 484 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 TAF1CQ15572 869 aaPredicted RBP14.86□□□□□ -0.03
LIG3-209ENST00000586435 WDR66Q8TBY9 1149 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 LPIN2Q92539 896 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 OTUD5Q96G74 571 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 ZFYVE28Q9HCC9 887 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 SNCAIPQ9Y6H5 919 aa14.86□□□□□ -0.03
LIG3-209ENST00000586435 CAP1Q01518 475 aa14.85□□□□□ -0.03
LIG3-209ENST00000586435 ARHGEF6Q15052 776 aa14.85□□□□□ -0.03
LIG3-209ENST00000586435 DCAF15Q66K64 600 aa14.85□□□□□ -0.03
LIG3-209ENST00000586435 ERO1BQ86YB8 467 aa14.85□□□□□ -0.03
LIG3-209ENST00000586435 FAM43AQ8N2R8 423 aa14.85□□□□□ -0.03
LIG3-209ENST00000586435 WRNIP1Q96S55 665 aa14.85□□□□□ -0.03
LIG3-209ENST00000586435 POTEFA5A3E0 1075 aa14.84□□□□□ -0.03
LIG3-209ENST00000586435 ZBTB22O15209 634 aa14.84□□□□□ -0.03
LIG3-209ENST00000586435 CETPP11597 493 aa14.84□□□□□ -0.03
LIG3-209ENST00000586435 ATG9AQ7Z3C6 839 aa14.84□□□□□ -0.03
LIG3-209ENST00000586435 DOCK2Q92608 1830 aa14.84□□□□□ -0.03
LIG3-209ENST00000586435 CENPFP49454 3210 aa14.84□□□□□ -0.03
LIG3-209ENST00000586435 MYH2Q9UKX2 1941 aa14.84□□□□□ -0.03
LIG3-209ENST00000586435 ZSWIM8A7E2V4 1837 aa14.83□□□□□ -0.04
LIG3-209ENST00000586435 WDHD1O75717 1129 aaPredicted RBP14.83□□□□□ -0.04
LIG3-209ENST00000586435 CIAO1O76071 339 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms