RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 FKBP1BP68106 108 aa34.88■■■■□ 3.17
LIG3-208ENST00000586407 NOGQ13253 232 aa34.88■■■■□ 3.17
LIG3-208ENST00000586407 SSC5DA1L4H1 1573 aa34.87■■■■□ 3.17
LIG3-208ENST00000586407 NF2P35240 595 aa34.87■■■■□ 3.17
LIG3-208ENST00000586407 TIMM10P62072 90 aa34.87■■■■□ 3.17
LIG3-208ENST00000586407 ZNF70Q9UC06 446 aaPredicted RBP34.87■■■■□ 3.17
LIG3-208ENST00000586407 SLC10A3P09131 477 aa34.86■■■■□ 3.17
LIG3-208ENST00000586407 RASAL3Q86YV0 1011 aa34.86■■■■□ 3.17
LIG3-208ENST00000586407 SPDYE2Q495Y8 402 aa34.85■■■■□ 3.17
LIG3-208ENST00000586407 CCDC102AQ96A19 550 aa34.85■■■■□ 3.17
LIG3-208ENST00000586407 BEGAINQ9BUH8 593 aa34.85■■■■□ 3.17
LIG3-208ENST00000586407 KIF23Q02241 960 aaPredicted RBP34.84■■■■□ 3.17
LIG3-208ENST00000586407 A0A1B0GUL7 405 aa34.83■■■■□ 3.17
LIG3-208ENST00000586407 ZBTB7BO15156 539 aaPredicted RBP34.83■■■■□ 3.17
LIG3-208ENST00000586407 IFFO2Q5TF58 517 aa34.83■■■■□ 3.17
LIG3-208ENST00000586407 RASA3Q14644 834 aa34.82■■■■□ 3.16
LIG3-208ENST00000586407 CCDC102BQ68D86 513 aa34.82■■■■□ 3.16
LIG3-208ENST00000586407 TNS4Q8IZW8 715 aa34.82■■■■□ 3.16
LIG3-208ENST00000586407 WDR66Q8TBY9 1149 aa34.82■■■■□ 3.16
LIG3-208ENST00000586407 CACNB3P54284 484 aa34.81■■■■□ 3.16
LIG3-208ENST00000586407 POLA2Q14181 598 aa34.81■■■■□ 3.16
LIG3-208ENST00000586407 NBPF12Q5TAG4 269 aaPredicted RBP34.81■■■■□ 3.16
LIG3-208ENST00000586407 TEKT1Q969V4 418 aa34.81■■■■□ 3.16
LIG3-208ENST00000586407 GNL3LQ9NVN8 582 aaKnown RBP34.81■■■■□ 3.16
LIG3-208ENST00000586407 ZBTB4Q9P1Z0 1013 aaPredicted RBP34.81■■■■□ 3.16
LIG3-208ENST00000586407 ANGEL1Q9UNK9 670 aaKnown RBP34.81■■■■□ 3.16
LIG3-208ENST00000586407 TCP10L2B9ZVM9 353 aa34.8■■■■□ 3.16
LIG3-208ENST00000586407 G3BP1Q13283 466 aaKnown RBP eCLIP34.8■■■■□ 3.16
LIG3-208ENST00000586407 CDAN1Q8IWY9 1227 aa34.8■■■■□ 3.16
LIG3-208ENST00000586407 XAGE2Q96GT9 111 aa34.8■■■■□ 3.16
LIG3-208ENST00000586407 PRDM10Q9NQV6 1147 aa34.8■■■■□ 3.16
LIG3-208ENST00000586407 PRDX5P30044 214 aa34.79■■■■□ 3.16
LIG3-208ENST00000586407 ATP8B2P98198 1209 aa34.79■■■■□ 3.16
LIG3-208ENST00000586407 HDLBPQ00341 1268 aaKnown RBP34.79■■■■□ 3.16
LIG3-208ENST00000586407 NEUROD6Q96NK8 337 aa34.79■■■■□ 3.16
LIG3-208ENST00000586407 PPP2R3BQ9Y5P8 575 aa34.79■■■■□ 3.16
LIG3-208ENST00000586407 ARMC9Q7Z3E5 817 aa34.78■■■■□ 3.16
LIG3-208ENST00000586407 AKAP2Q9Y2D5 859 aa34.78■■■■□ 3.16
LIG3-208ENST00000586407 AKAP11Q9UKA4 1901 aa34.78■■■■□ 3.16
LIG3-208ENST00000586407 MKRN3Q13064 507 aaKnown RBP34.77■■■■□ 3.16
LIG3-208ENST00000586407 DIXDC1Q155Q3 683 aa34.77■■■■□ 3.16
LIG3-208ENST00000586407 SSH3Q8TE77 659 aa34.77■■■■□ 3.16
LIG3-208ENST00000586407 RCAN3Q9UKA8 241 aa34.77■■■■□ 3.16
LIG3-208ENST00000586407 SUGT1Q9Y2Z0 365 aa34.77■■■■□ 3.16
LIG3-208ENST00000586407 RASGRF1Q13972 1273 aa34.76■■■■□ 3.16
LIG3-208ENST00000586407 ZDHHC15Q96MV8 337 aa34.76■■■■□ 3.16
LIG3-208ENST00000586407 DENND2AQ9ULE3 1009 aa34.76■■■■□ 3.16
LIG3-208ENST00000586407 MAST3O60307 1309 aa34.76■■■■□ 3.15
LIG3-208ENST00000586407 OTOFQ9HC10 1997 aa34.75■■■■□ 3.15
LIG3-208ENST00000586407 APOBEC3HQ6NTF7 200 aaKnown RBP34.75■■■■□ 3.15
LIG3-208ENST00000586407 TMEM39BQ9GZU3 492 aa34.75■■■■□ 3.15
LIG3-208ENST00000586407 TNFAIP1Q13829 316 aa34.74■■■■□ 3.15
LIG3-208ENST00000586407 CSRNP1Q96S65 589 aa34.74■■■■□ 3.15
LIG3-208ENST00000586407 CASP8AP2Q9UKL3 1982 aa34.74■■■■□ 3.15
LIG3-208ENST00000586407 MYH2Q9UKX2 1941 aa34.73■■■■□ 3.15
LIG3-208ENST00000586407 SEMA3EO15041 775 aa34.73■■■■□ 3.15
LIG3-208ENST00000586407 OS9Q13438 667 aaPredicted RBP34.73■■■■□ 3.15
LIG3-208ENST00000586407 LDLRAD1Q5T700 205 aa34.73■■■■□ 3.15
LIG3-208ENST00000586407 SURF6O75683 361 aaKnown RBP34.72■■■■□ 3.15
LIG3-208ENST00000586407 LDHBP07195 334 aaKnown RBP34.72■■■■□ 3.15
LIG3-208ENST00000586407 MVPQ14764 893 aaKnown RBP34.72■■■■□ 3.15
LIG3-208ENST00000586407 SUPT20HL1Q3ZLR7 823 aa34.72■■■■□ 3.15
LIG3-208ENST00000586407 HHIPL2Q6UWX4 724 aa34.72■■■■□ 3.15
LIG3-208ENST00000586407 CLMNQ96JQ2 1002 aa34.72■■■■□ 3.15
LIG3-208ENST00000586407 TEPSINQ96N21 525 aa34.72■■■■□ 3.15
LIG3-208ENST00000586407 DAGLAQ9Y4D2 1042 aa34.72■■■■□ 3.15
LIG3-208ENST00000586407 MRIQ9BWK5 157 aa34.71■■■■□ 3.15
LIG3-208ENST00000586407 COG6Q9Y2V7 657 aa34.71■■■■□ 3.15
LIG3-208ENST00000586407 SALL1Q9NSC2 1324 aa34.71■■■■□ 3.15
LIG3-208ENST00000586407 CEP85Q6P2H3 762 aa34.7■■■■□ 3.15
LIG3-208ENST00000586407 PI16Q6UXB8 463 aa34.7■■■■□ 3.15
LIG3-208ENST00000586407 PPP1R12BO60237 982 aaPredicted RBP34.69■■■■□ 3.14
LIG3-208ENST00000586407 GORABQ5T7V8 394 aa34.69■■■■□ 3.14
LIG3-208ENST00000586407 CA12O43570 354 aa34.68■■■■□ 3.14
LIG3-208ENST00000586407 USP2O75604 605 aaPredicted RBP34.68■■■■□ 3.14
LIG3-208ENST00000586407 TNNI2P48788 182 aa34.68■■■■□ 3.14
LIG3-208ENST00000586407 MAP3K11Q16584 847 aa34.68■■■■□ 3.14
LIG3-208ENST00000586407 ABCF2Q9UG63 623 aa34.68■■■■□ 3.14
LIG3-208ENST00000586407 RNF186Q9NXI6 227 aa34.67■■■■□ 3.14
LIG3-208ENST00000586407 TMOD2Q9NZR1 351 aa34.67■■■■□ 3.14
LIG3-208ENST00000586407 TRPA1O75762 1119 aa34.66■■■■□ 3.14
LIG3-208ENST00000586407 CAPN15O75808 1086 aa34.66■■■■□ 3.14
LIG3-208ENST00000586407 TNNI3KQ59H18 835 aa34.66■■■■□ 3.14
LIG3-208ENST00000586407 HMG20BQ9P0W2 317 aa34.66■■■■□ 3.14
LIG3-208ENST00000586407 FPGT-TNNI3KV9GXZ4 949 aa34.66■■■■□ 3.14
LIG3-208ENST00000586407 MS4A1P11836 297 aa34.65■■■■□ 3.14
LIG3-208ENST00000586407 AK9Q5TCS8 1911 aa34.64■■■■□ 3.14
LIG3-208ENST00000586407 C20orf194Q5TEA3 1177 aa34.64■■■■□ 3.14
LIG3-208ENST00000586407 CDC42EP5Q6NZY7 148 aa34.64■■■■□ 3.14
LIG3-208ENST00000586407 SLC10A4Q96EP9 437 aa34.64■■■■□ 3.14
LIG3-208ENST00000586407 DBNDD2Q9BQY9 259 aa34.64■■■■□ 3.14
LIG3-208ENST00000586407 NOP58Q9Y2X3 529 aaKnown RBP34.64■■■■□ 3.14
LIG3-208ENST00000586407 PDS5AQ29RF7 1337 aaKnown RBP34.63■■■■□ 3.13
LIG3-208ENST00000586407 ZBTB22O15209 634 aa34.63■■■■□ 3.13
LIG3-208ENST00000586407 IREB2P48200 963 aaKnown RBP34.63■■■■□ 3.13
LIG3-208ENST00000586407 SPRYD7Q5W111 196 aa34.63■■■■□ 3.13
LIG3-208ENST00000586407 TBC1D9Q6ZT07 1266 aa34.62■■■■□ 3.13
LIG3-208ENST00000586407 ZGPATQ8N5A5 531 aaKnown RBP34.62■■■■□ 3.13
LIG3-208ENST00000586407 EXOC6BQ9Y2D4 811 aa34.62■■■■□ 3.13
LIG3-208ENST00000586407 ARID4AP29374 1257 aaPredicted RBP34.61■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms