RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TYRO3	Q06418	890 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ARID5B	Q14865	1188 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ATP2B3	Q16720	1220 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TRIM5	Q9C035	493 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	BCL2L12	Q9HB09	334 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	MED23	Q9ULK4	1368 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ZNF609	O15014	1411 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CYP19A1	P11511	503 aa	Predicted RBP	13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	KRT85	P78386	507 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	LRRC24	Q50LG9	513 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	MFSD4B	Q5TF39	518 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	KCNB2	Q92953	911 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	RPS6KB1	P23443	525 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	UVSSA	Q2YD98	709 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	DZIP3	Q86Y13	1208 aa	Known RBP	13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	PUS3	Q9BZE2	481 aa	Known RBP	13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	KDM4C	Q9H3R0	1056 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	SHANK3	Q9BYB0	1731 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	LOC102724428	A0A0B4J2F2	783 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	SIK1	P57059	783 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ZRSR2	Q15696	482 aa	Known RBP	13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	MAP3K11	Q16584	847 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	STOX1	Q6ZVD7	989 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CBX8	Q9HC52	389 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	KIF3A	Q9Y496	699 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	MRC1	P22897	1456 aa		13.5	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TCIRG1	Q13488	830 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	C1QTNF12	Q5T7M4	302 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	RAB11FIP4	Q86YS3	637 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	THRAP3	Q9Y2W1	955 aa	Known RBP	13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	BCL9	O00512	1426 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CYP21A2	P08686	494 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	U2AF2	P26368	475 aa	Known RBP eCLIP	13.49	□□□□□ -0.25	6e-7	■■■□□ 18.2
CDK5RAP3-231	ENST00000584063	CASP7	P55210	303 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	KIAA1524	Q8TCG1	905 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TM6SF1	Q9BZW5	370 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	COPRS	Q9NQ92	184 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	SNRK	Q9NRH2	765 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	BSDC1	Q9NW68	430 aa	Predicted RBP	13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TRMT112	Q9UI30	125 aa	Known RBP	13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	JCAD	Q9P266	1359 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	LRP6	O75581	1613 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CCDC94	Q9BW85	323 aa	Predicted RBP	13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	IGSF5	Q9NSI5	407 aa		13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.49	□□□□□ -0.25	2e-6	■□□□□ 10.3
CDK5RAP3-231	ENST00000584063		V9GYY5	206 aa	Predicted RBP	13.49	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	FOXO4	P98177	505 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063		Q6ZUG5	572 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CCDC191	Q8NCU4	936 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ACRBP	Q8NEB7	543 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	BRF1	Q92994	677 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	PGBD1	Q96JS3	809 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	WDR70	Q9NW82	654 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CRKL	P46109	303 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	BICDL1	Q6ZP65	573 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	NCOA5	Q9HCD5	579 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	GPHN	Q9NQX3	736 aa	Predicted RBP	13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CGN	Q9P2M7	1197 aa	Known RBP	13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	DISP2	A7MBM2	1401 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TOGARAM1	Q9Y4F4	1720 aa		13.48	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ADAMTS7	Q9UKP4	1686 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063		H7C1W4	665 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	NPHP1	O15259	732 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	LETM1	O95202	739 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ITPK1	Q13572	414 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CCDC57	Q2TAC2	916 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TTLL5	Q6EMB2	1281 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	LEO1	Q8WVC0	666 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	KCP	Q6ZWJ8	1503 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063		H3BQV1	296 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ZSCAN20	P17040	1043 aa	Predicted RBP	13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ATP5J	P18859	108 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	SF3A1	Q15459	793 aa	Known RBP	13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	IFFO2	Q5TF58	517 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CLEC4G	Q6UXB4	293 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	ATG9A	Q7Z3C6	839 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	PMM1	Q92871	262 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	GABBR1	Q9UBS5	961 aa		13.47	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CALR	P27797	417 aa	Known RBP	13.46	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TTC30B	Q8N4P2	665 aa		13.46	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	FAM200A	Q8TCP9	573 aa		13.46	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	MAP3K15	Q6ZN16	1313 aa		13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PUS10	Q3MIT2	529 aa	Known RBP	13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CCDC144B	Q3MJ40	725 aa		13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PI16	Q6UXB8	463 aa		13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CCDC144CP	Q8IYA2	1237 aa		13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ITFG2	Q969R8	447 aa		13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	MAP7D2	Q96T17	732 aa		13.46	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	PLEKHG2	Q9H7P9	1386 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	CAPN2	P17655	700 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ZNF165	P49910	485 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	RABL6	Q3YEC7	729 aa	Predicted RBP	13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	ZC3H12A	Q5D1E8	599 aa	Known RBP	13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	OTUD7B	Q6GQQ9	843 aa		13.45	□□□□□ -0.26
CDK5RAP3-231	ENST00000584063	NEK1	Q96PY6	1258 aa		13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms