RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	DCAF11	Q8TEB1	546 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	PMEPA1	Q969W9	287 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	CRELD1	Q96HD1	420 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	SSBP4	Q9BWG4	385 aa	Predicted RBP	7.06	□□□□□ -1.28
SS18-223	ENST00000583595	MRPL18	Q9H0U6	180 aa	Known RBP	7.06	□□□□□ -1.28
SS18-223	ENST00000583595	CHRD	Q9H2X0	955 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	SH2B1	Q9NRF2	756 aa	Predicted RBP	7.06	□□□□□ -1.28
SS18-223	ENST00000583595	TBX22	Q9Y458	520 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	NISCH	Q9Y2I1	1504 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	ALX3	O95076	343 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	H2AFB1	P0C5Y9	115 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	H2AFB2	P0C5Z0	115 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	PTPRA	P18433	802 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	EIF4B	P23588	611 aa	Known RBP	7.05	□□□□□ -1.28
SS18-223	ENST00000583595	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	7.05	□□□□□ -1.28
SS18-223	ENST00000583595	VPS37D	Q86XT2	251 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	MCF2L2	Q86YR7	1114 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	GALNT11	Q8NCW6	608 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	AKTIP	Q9H8T0	292 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	GGT7	Q9UJ14	662 aa		7.05	□□□□□ -1.28
SS18-223	ENST00000583595	FAM177B	A6PVY3	158 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	PHACTR2	O75167	634 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	TNFRSF21	O75509	655 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	TRPA1	O75762	1119 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	PTPN12	Q05209	780 aa	Known RBP	7.04	□□□□□ -1.28
SS18-223	ENST00000583595	PI16	Q6UXB8	463 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	NLGN1	Q8N2Q7	840 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	TMEM130	Q8N3G9	435 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	FBF1	Q8TES7	1133 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	MEGF10	Q96KG7	1140 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	FRMD6	Q96NE9	622 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	KRTAP4-8	Q9BYQ9	185 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	OSBPL7	Q9BZF2	842 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	DZANK1	Q9NVP4	752 aa		7.04	□□□□□ -1.28
SS18-223	ENST00000583595	TTBK1	Q5TCY1	1321 aa	Predicted RBP	7.03	□□□□□ -1.28
SS18-223	ENST00000583595		F8W735	103 aa	Predicted RBP	7.03	□□□□□ -1.28
SS18-223	ENST00000583595	NFKBIE	O00221	500 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	FSCN2	O14926	492 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	EREG	O14944	169 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	STK10	O94804	968 aa	Known RBP	7.03	□□□□□ -1.28
SS18-223	ENST00000583595	EPHA1	P21709	976 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	MEI1	Q5TIA1	1274 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	USPL1	Q5W0Q7	1092 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	FAM117B	Q6P1L5	589 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	SNX29	Q8TEQ0	813 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	CARD10	Q9BWT7	1032 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	ADAM19	Q9H013	955 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	FOXD3	Q9UJU5	478 aa	Predicted RBP	7.03	□□□□□ -1.28
SS18-223	ENST00000583595	SPG7	Q9UQ90	795 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	USP31	Q70CQ4	1352 aa		7.03	□□□□□ -1.28
SS18-223	ENST00000583595	PDE2A	O00408	941 aa	Predicted RBP	7.02	□□□□□ -1.29
SS18-223	ENST00000583595	CD68	P34810	354 aa	Predicted RBP	7.02	□□□□□ -1.29
SS18-223	ENST00000583595	PAK2	Q13177	524 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	BMS1	Q14692	1282 aa	Known RBP	7.02	□□□□□ -1.29
SS18-223	ENST00000583595	TCEAL1	Q15170	157 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	PRSS36	Q5K4E3	855 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	SOGA3	Q5TF21	947 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	ZNF746	Q6NUN9	644 aa	Predicted RBP	7.02	□□□□□ -1.29
SS18-223	ENST00000583595	HS2ST1	Q7LGA3	356 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	EPS8L3	Q8TE67	593 aa	Known RBP	7.02	□□□□□ -1.29
SS18-223	ENST00000583595	GPATCH3	Q96I76	525 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	HHIP	Q96QV1	700 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	OSMR	Q99650	979 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	7.02	□□□□□ -1.29
SS18-223	ENST00000583595	OSBPL2	Q9H1P3	480 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	KCNK4	Q9NYG8	393 aa		7.02	□□□□□ -1.29
SS18-223	ENST00000583595	ATF4	P18848	351 aa	Predicted RBP	7.01	□□□□□ -1.29
SS18-223	ENST00000583595	ZMYM1	Q5SVZ6	1142 aa		7.01	□□□□□ -1.29
SS18-223	ENST00000583595	AGGF1	Q8N302	714 aa	eCLIP	7.01	□□□□□ -1.29
SS18-223	ENST00000583595	POLR3GL	Q9BT43	218 aa		7.01	□□□□□ -1.29
SS18-223	ENST00000583595	COPRS	Q9NQ92	184 aa		7.01	□□□□□ -1.29
SS18-223	ENST00000583595	TM4SF5	O14894	197 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	CPNE3	O75131	537 aa	Known RBP	7	□□□□□ -1.29
SS18-223	ENST00000583595	FGR	P09769	529 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	EDN3	P14138	238 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	CABP4	P57796	275 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	TAF1C	Q15572	869 aa	Predicted RBP	7	□□□□□ -1.29
SS18-223	ENST00000583595	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	7	□□□□□ -1.29
SS18-223	ENST00000583595	FOXD4L3	Q6VB84	417 aa	Predicted RBP	7	□□□□□ -1.29
SS18-223	ENST00000583595	JAZF1	Q86VZ6	243 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	DZIP1L	Q8IYY4	767 aa	Known RBP	7	□□□□□ -1.29
SS18-223	ENST00000583595		Q8N3U1	123 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	TMEM102	Q8N9M5	508 aa	Predicted RBP	7	□□□□□ -1.29
SS18-223	ENST00000583595	KLHL23	Q8NBE8	558 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	KLHDC7B	Q96G42	594 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	ZKSCAN3	Q9BRR0	538 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	DNAJC25	Q9H1X3	360 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	C12orf49	Q9H741	205 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595	SEC31B	Q9NQW1	1179 aa		7	□□□□□ -1.29
SS18-223	ENST00000583595		H3BRJ5	948 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	DDX3Y	O15523	660 aa	Known RBP	6.99	□□□□□ -1.29
SS18-223	ENST00000583595	WISP1	O95388	367 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	NEFL	P07196	543 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	GLB1	P16278	677 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	ACAD11	Q709F0	780 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	6.99	□□□□□ -1.29
SS18-223	ENST00000583595	NXPE3	Q969Y0	559 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	CCDC74A	Q96AQ1	378 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	ZFYVE28	Q9HCC9	887 aa		6.99	□□□□□ -1.29
SS18-223	ENST00000583595	MRPL42	Q9Y6G3	142 aa	Known RBP	6.99	□□□□□ -1.29

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