RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 PDE6BP35913 854 aa13.26□□□□□ -0.29
SS18-221ENST00000582448 NPM2Q86SE8 214 aaKnown RBP13.26□□□□□ -0.29
SS18-221ENST00000582448 PNNQ9H307 717 aaKnown RBP13.26□□□□□ -0.29
SS18-221ENST00000582448 TNRC6CQ9HCJ0 1690 aaKnown RBP13.26□□□□□ -0.29
SS18-221ENST00000582448 ABL2P42684 1182 aa13.25□□□□□ -0.29
SS18-221ENST00000582448 RELBQ01201 579 aa13.25□□□□□ -0.29
SS18-221ENST00000582448 KDF1Q8NAX2 398 aaPredicted RBP13.25□□□□□ -0.29
SS18-221ENST00000582448 PRM3Q9NNZ6 103 aa13.25□□□□□ -0.29
SS18-221ENST00000582448 CYLDQ9NQC7 956 aa13.25□□□□□ -0.29
SS18-221ENST00000582448 SPINT1O43278 529 aa13.24□□□□□ -0.29
SS18-221ENST00000582448 WFS1O76024 890 aa13.24□□□□□ -0.29
SS18-221ENST00000582448 EIF5P55010 431 aaKnown RBP13.24□□□□□ -0.29
SS18-221ENST00000582448 MCCD1P59942 119 aaPredicted RBP13.24□□□□□ -0.29
SS18-221ENST00000582448 BRIP1Q9BX63 1249 aa13.24□□□□□ -0.29
SS18-221ENST00000582448 DNMT3LQ9UJW3 386 aa13.24□□□□□ -0.29
SS18-221ENST00000582448 AFDNP55196 1824 aaKnown RBP13.23□□□□□ -0.29
SS18-221ENST00000582448 DIAPH1O60610 1272 aaKnown RBP13.23□□□□□ -0.29
SS18-221ENST00000582448 A1BGP04217 495 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 VAC14Q08AM6 782 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 TEFQ10587 303 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 TMEM132AQ24JP5 1023 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 PRR5LQ6MZQ0 368 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 SETDB2Q96T68 719 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 TAOK3Q9H2K8 898 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 NXF1Q9UBU9 619 aaKnown RBP13.23□□□□□ -0.29
SS18-221ENST00000582448 PCNTO95613 3336 aa13.23□□□□□ -0.29
SS18-221ENST00000582448 ADAMTS7Q9UKP4 1686 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 U2SURPO15042 1029 aaKnown RBP13.22□□□□□ -0.29
SS18-221ENST00000582448 MAN1A2O60476 641 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 NEFMP07197 916 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 ADH1AP07327 375 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 U2AF1L5P0DN76 240 aaPredicted RBP13.22□□□□□ -0.29
SS18-221ENST00000582448 VEGFBP49765 207 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 U2AF1Q01081 240 aaKnown RBP eCLIP13.22□□□□□ -0.292e-6■■■■□ 21.7
SS18-221ENST00000582448 RUNDC1Q96C34 613 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 ZNF496Q96IT1 587 aaPredicted RBP13.22□□□□□ -0.29
SS18-221ENST00000582448 COG6Q9Y2V7 657 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 SCN11AQ9UI33 1791 aa13.22□□□□□ -0.29
SS18-221ENST00000582448 FOXN1O15353 648 aa13.21□□□□□ -0.29
SS18-221ENST00000582448 ST5P78524 1137 aa13.21□□□□□ -0.29
SS18-221ENST00000582448 EAPPQ56P03 285 aaPredicted RBP13.21□□□□□ -0.29
SS18-221ENST00000582448 CNBD1Q8NA66 436 aa13.21□□□□□ -0.29
SS18-221ENST00000582448 CNKSR1Q969H4 720 aa13.21□□□□□ -0.29
SS18-221ENST00000582448 ZNF395Q9H8N7 513 aaPredicted RBP13.21□□□□□ -0.29
SS18-221ENST00000582448 CEP126Q9P2H0 1117 aa13.21□□□□□ -0.29
SS18-221ENST00000582448 CCDC88AQ3V6T2 1871 aa13.21□□□□□ -0.3
SS18-221ENST00000582448 TTLL8A6PVC2 850 aa13.2□□□□□ -0.3
SS18-221ENST00000582448 PIP4K2AP48426 406 aaPredicted RBP13.2□□□□□ -0.3
SS18-221ENST00000582448 PRPF40BQ6NWY9 871 aaKnown RBP13.2□□□□□ -0.3
SS18-221ENST00000582448 ZNF790Q6PG37 636 aa13.2□□□□□ -0.3
SS18-221ENST00000582448 CCDC146Q8IYE0 955 aa13.2□□□□□ -0.3
SS18-221ENST00000582448 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
SS18-221ENST00000582448 POM121Q96HA1 1249 aa13.2□□□□□ -0.3
SS18-221ENST00000582448 TEX13AQ9BXU3 409 aaPredicted RBP13.2□□□□□ -0.3
SS18-221ENST00000582448 FIGNL2A6NMB9 653 aa13.19□□□□□ -0.3
SS18-221ENST00000582448 IL6STP40189 918 aaPredicted RBP13.19□□□□□ -0.3
SS18-221ENST00000582448 CTSOP43234 321 aaPredicted RBP13.19□□□□□ -0.3
SS18-221ENST00000582448 RNF20Q5VTR2 975 aa13.19□□□□□ -0.3
SS18-221ENST00000582448 STYK1Q6J9G0 422 aa13.19□□□□□ -0.3
SS18-221ENST00000582448 AIDAQ96BJ3 306 aa13.19□□□□□ -0.3
SS18-221ENST00000582448 MASTLQ96GX5 879 aa13.19□□□□□ -0.3
SS18-221ENST00000582448 INSM2Q96T92 566 aaPredicted RBP13.19□□□□□ -0.3
SS18-221ENST00000582448 HEG1Q9ULI3 1381 aa13.19□□□□□ -0.3
SS18-221ENST00000582448 MAPK8IP3Q9UPT6 1336 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 IQCA1LA6NCM1 817 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 FAM177BA6PVY3 158 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 GNAT3A8MTJ3 354 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 APAF1O14727 1248 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 KCNQ3O43525 872 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 CAMTA2O94983 1202 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 SRGNP10124 158 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 SCTRP47872 440 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 ZNF592Q92610 1267 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 SUPT16HQ9Y5B9 1047 aaKnown RBP13.18□□□□□ -0.3
SS18-221ENST00000582448 PCDHB11Q9Y5F2 797 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 NRXN2Q9P2S2 1712 aa13.18□□□□□ -0.3
SS18-221ENST00000582448 TIAM2Q8IVF5 1701 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 BTBD11A6QL63 1104 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 PTGIRP43119 386 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 ERVK-9P63128 1117 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 SOGA3Q5TF21 947 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 LDHDQ86WU2 507 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 NBPF5PQ86XG9 351 aaPredicted RBP13.17□□□□□ -0.3
SS18-221ENST00000582448 GAS2L2Q8NHY3 880 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 CCDC85AQ96PX6 553 aaPredicted RBP13.17□□□□□ -0.3
SS18-221ENST00000582448 TAF1DQ9H5J8 278 aaPredicted RBP13.17□□□□□ -0.3
SS18-221ENST00000582448 USP16Q9Y5T5 823 aa13.17□□□□□ -0.3
SS18-221ENST00000582448 MRC1P22897 1456 aa13.16□□□□□ -0.3
SS18-221ENST00000582448 LTBP3Q9NS15 1303 aa13.16□□□□□ -0.3
SS18-221ENST00000582448 TMEM88BA6NKF7 163 aa13.16□□□□□ -0.3
SS18-221ENST00000582448 CTCFP49711 727 aaPredicted RBP13.16□□□□□ -0.3
SS18-221ENST00000582448 CCDC93Q567U6 631 aa13.16□□□□□ -0.3
SS18-221ENST00000582448 ZNF277Q9NRM2 450 aaPredicted RBP13.16□□□□□ -0.3
SS18-221ENST00000582448 CNTNAP1P78357 1384 aa13.16□□□□□ -0.3
SS18-221ENST00000582448 OLFM4Q6UX06 510 aa13.15□□□□□ -0.3
SS18-221ENST00000582448 DLEC1Q9Y238 1755 aa13.15□□□□□ -0.31
SS18-221ENST00000582448 PRAMEF22A3QJZ6 481 aa13.14□□□□□ -0.31
SS18-221ENST00000582448 LBX1P52954 281 aa13.14□□□□□ -0.31
SS18-221ENST00000582448 TSGA10IPQ3SY00 556 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms