RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 COL13A1Q5TAT6 717 aaPredicted RBP20.56■□□□□ 0.88
SREBF1-219ENST00000580540 CCDC102BQ68D86 513 aa20.56■□□□□ 0.88
SREBF1-219ENST00000580540 TEKT1Q969V4 418 aa20.56■□□□□ 0.88
SREBF1-219ENST00000580540 CCDC102AQ96A19 550 aa20.56■□□□□ 0.88
SREBF1-219ENST00000580540 XAGE2Q96GT9 111 aa20.56■□□□□ 0.88
SREBF1-219ENST00000580540 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.56■□□□□ 0.88
SREBF1-219ENST00000580540 ZNF70Q9UC06 446 aaPredicted RBP20.56■□□□□ 0.88
SREBF1-219ENST00000580540 DENND2AQ9ULE3 1009 aa20.56■□□□□ 0.88
SREBF1-219ENST00000580540 SURF6O75683 361 aaKnown RBP20.55■□□□□ 0.88
SREBF1-219ENST00000580540 CTCFP49711 727 aaPredicted RBP20.55■□□□□ 0.88
SREBF1-219ENST00000580540 NOGQ13253 232 aa20.55■□□□□ 0.88
SREBF1-219ENST00000580540 POLA2Q14181 598 aa20.55■□□□□ 0.88
SREBF1-219ENST00000580540 GORABQ5T7V8 394 aa20.55■□□□□ 0.88
SREBF1-219ENST00000580540 ZIC5Q96T25 663 aa20.55■□□□□ 0.88
SREBF1-219ENST00000580540 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.55■□□□□ 0.88
SREBF1-219ENST00000580540 HDLBPQ00341 1268 aaKnown RBP20.54■□□□□ 0.88
SREBF1-219ENST00000580540 RASA3Q14644 834 aa20.54■□□□□ 0.88
SREBF1-219ENST00000580540 SPDYE2Q495Y8 402 aa20.54■□□□□ 0.88
SREBF1-219ENST00000580540 ARMC9Q7Z3E5 817 aa20.54■□□□□ 0.88
SREBF1-219ENST00000580540 SSH3Q8TE77 659 aa20.54■□□□□ 0.88
SREBF1-219ENST00000580540 COG6Q9Y2V7 657 aa20.54■□□□□ 0.88
SREBF1-219ENST00000580540 SUGT1Q9Y2Z0 365 aa20.54■□□□□ 0.88
SREBF1-219ENST00000580540 MAST3O60307 1309 aa20.53■□□□□ 0.88
SREBF1-219ENST00000580540 MYH13Q9UKX3 1938 aa20.53■□□□□ 0.88
SREBF1-219ENST00000580540 TCP10L2B9ZVM9 353 aa20.53■□□□□ 0.88
SREBF1-219ENST00000580540 MVPQ14764 893 aaKnown RBP20.53■□□□□ 0.88
SREBF1-219ENST00000580540 ANGEL1Q9UNK9 670 aaKnown RBP20.53■□□□□ 0.88
SREBF1-219ENST00000580540 FZD1Q9UP38 647 aa20.53■□□□□ 0.88
SREBF1-219ENST00000580540 PPP2R3BQ9Y5P8 575 aa20.53■□□□□ 0.88
SREBF1-219ENST00000580540 COL1A1P02452 1464 aaPredicted RBP20.53■□□□□ 0.88
SREBF1-219ENST00000580540 ARAP2Q8WZ64 1704 aa20.53■□□□□ 0.88
SREBF1-219ENST00000580540 PAPPA2Q9BXP8 1791 aa20.52■□□□□ 0.88
SREBF1-219ENST00000580540 FAM155AB1AL88 458 aaPredicted RBP20.52■□□□□ 0.88
SREBF1-219ENST00000580540 SEMA3EO15041 775 aa20.52■□□□□ 0.88
SREBF1-219ENST00000580540 LDHBP07195 334 aaKnown RBP20.52■□□□□ 0.88
SREBF1-219ENST00000580540 LBX1P52954 281 aa20.52■□□□□ 0.88
SREBF1-219ENST00000580540 KIF23Q02241 960 aaPredicted RBP20.52■□□□□ 0.88
SREBF1-219ENST00000580540 TNFAIP1Q13829 316 aa20.52■□□□□ 0.88
SREBF1-219ENST00000580540 SUPT20HL1Q3ZLR7 823 aa20.52■□□□□ 0.88
SREBF1-219ENST00000580540 YTHDC1Q96MU7 727 aaKnown RBP20.52■□□□□ 0.88
SREBF1-219ENST00000580540 ECM29Q5VYK3 1845 aa20.51■□□□□ 0.87
SREBF1-219ENST00000580540 SLC10A3P09131 477 aa20.51■□□□□ 0.87
SREBF1-219ENST00000580540 PRDX5P30044 214 aa20.51■□□□□ 0.87
SREBF1-219ENST00000580540 CACNB3P54284 484 aa20.51■□□□□ 0.87
SREBF1-219ENST00000580540 NBPF12Q5TAG4 269 aaPredicted RBP20.51■□□□□ 0.87
SREBF1-219ENST00000580540 TMOD2Q9NZR1 351 aa20.51■□□□□ 0.87
SREBF1-219ENST00000580540 TSKSQ9UJT2 592 aa20.51■□□□□ 0.87
SREBF1-219ENST00000580540 PPP1R12BO60237 982 aaPredicted RBP20.5■□□□□ 0.87
SREBF1-219ENST00000580540 TNNI2P48788 182 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 RASGRF1Q13972 1273 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 DIXDC1Q155Q3 683 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 CEP85Q6P2H3 762 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 HHIPL2Q6UWX4 724 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 RASAL3Q86YV0 1011 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.5■□□□□ 0.87
SREBF1-219ENST00000580540 ZDHHC15Q96MV8 337 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 MRIQ9BWK5 157 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 ABCF2Q9UG63 623 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 DDX19BQ9UMR2 479 aa20.5■□□□□ 0.87
SREBF1-219ENST00000580540 HSPA8P11142 646 aaKnown RBP20.49■□□□□ 0.87
SREBF1-219ENST00000580540 MKRN3Q13064 507 aaKnown RBP20.49■□□□□ 0.87
SREBF1-219ENST00000580540 APOBEC3HQ6NTF7 200 aaKnown RBP20.49■□□□□ 0.87
SREBF1-219ENST00000580540 ZGPATQ8N5A5 531 aaKnown RBP20.49■□□□□ 0.87
SREBF1-219ENST00000580540 THSD7BQ9C0I4 1608 aa20.49■□□□□ 0.87
SREBF1-219ENST00000580540 TMEM39BQ9GZU3 492 aa20.48■□□□□ 0.87
SREBF1-219ENST00000580540 TNNI3KQ59H18 835 aa20.47■□□□□ 0.87
SREBF1-219ENST00000580540 DZIP1Q86YF9 867 aaKnown RBP20.47■□□□□ 0.87
SREBF1-219ENST00000580540 TNS4Q8IZW8 715 aa20.47■□□□□ 0.87
SREBF1-219ENST00000580540 PRDM10Q9NQV6 1147 aa20.47■□□□□ 0.87
SREBF1-219ENST00000580540 NOP58Q9Y2X3 529 aaKnown RBP20.47■□□□□ 0.87
SREBF1-219ENST00000580540 DAGLAQ9Y4D2 1042 aa20.47■□□□□ 0.87
SREBF1-219ENST00000580540 FPGT-TNNI3KV9GXZ4 949 aa20.47■□□□□ 0.87
SREBF1-219ENST00000580540 SALL1Q9NSC2 1324 aa20.47■□□□□ 0.87
SREBF1-219ENST00000580540 C20orf194Q5TEA3 1177 aa20.46■□□□□ 0.87
SREBF1-219ENST00000580540 SPTY2D1Q68D10 685 aaPredicted RBP20.46■□□□□ 0.87
SREBF1-219ENST00000580540 CDAN1Q8IWY9 1227 aa20.46■□□□□ 0.87
SREBF1-219ENST00000580540 SLC10A4Q96EP9 437 aa20.46■□□□□ 0.87
SREBF1-219ENST00000580540 EXOC6BQ9Y2D4 811 aa20.46■□□□□ 0.87
SREBF1-219ENST00000580540 IREB2P48200 963 aaKnown RBP20.45■□□□□ 0.86
SREBF1-219ENST00000580540 TTC39AQ5SRH9 613 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 LDLRAD1Q5T700 205 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 PI16Q6UXB8 463 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 ERICH6Q7L0X2 663 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 SPATA5Q8NB90 893 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 CSRNP1Q96S65 589 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 DBNDD2Q9BQY9 259 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 CHMP4BQ9H444 224 aaKnown RBP20.45■□□□□ 0.86
SREBF1-219ENST00000580540 GPR108Q9NPR9 543 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 HMG20BQ9P0W2 317 aa20.45■□□□□ 0.86
SREBF1-219ENST00000580540 SSC5DA1L4H1 1573 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 CA12O43570 354 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 USP2O75604 605 aaPredicted RBP20.44■□□□□ 0.86
SREBF1-219ENST00000580540 UQCRFS1P1P0C7P4 283 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 CCDC158Q5M9N0 1113 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 TBC1D9Q6ZT07 1266 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 TEPSINQ96N21 525 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 CCDC8Q9H0W5 538 aaPredicted RBP20.44■□□□□ 0.86
SREBF1-219ENST00000580540 BCL11AQ9H165 835 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 ZBTB40Q9NUA8 1239 aa20.44■□□□□ 0.86
SREBF1-219ENST00000580540 USP40Q9NVE5 1235 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms