RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RUSC1Q9BVN2 902 aa11.13□□□□□ -0.63
SS18-214ENST00000580003 PARP2Q9UGN5 583 aa11.13□□□□□ -0.63
SS18-214ENST00000580003 GLB1P16278 677 aa11.12□□□□□ -0.63
SS18-214ENST00000580003 FAAP100Q0VG06 881 aa11.12□□□□□ -0.63
SS18-214ENST00000580003 PSMD2Q13200 908 aa11.12□□□□□ -0.63
SS18-214ENST00000580003 CEP41Q9BYV8 373 aa11.12□□□□□ -0.63
SS18-214ENST00000580003 RNF208Q9H0X6 261 aa11.12□□□□□ -0.63
SS18-214ENST00000580003 LOC100289279A0A1B0GTE1 492 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 USP17L7P0C7H9 530 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 AP3B2Q13367 1082 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 DOC2BQ14184 412 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 POU4F3Q15319 338 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 C3orf58Q8NDZ4 430 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 CORO1BQ9BR76 489 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 BCL2L13Q9BXK5 485 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 TMEM39AQ9NV64 488 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 AK5Q9Y6K8 562 aa11.11□□□□□ -0.63
SS18-214ENST00000580003 MAOBP27338 520 aa11.1□□□□□ -0.63
SS18-214ENST00000580003 HP1BP3Q5SSJ5 553 aaPredicted RBP11.1□□□□□ -0.63
SS18-214ENST00000580003 PPM1HQ9ULR3 514 aa11.1□□□□□ -0.63
SS18-214ENST00000580003 ZNF326Q5BKZ1 582 aaKnown RBP11.09□□□□□ -0.63
SS18-214ENST00000580003 Q6ZS46 218 aa11.09□□□□□ -0.63
SS18-214ENST00000580003 MEGF10Q96KG7 1140 aa11.09□□□□□ -0.63
SS18-214ENST00000580003 CEP44Q9C0F1 390 aa11.09□□□□□ -0.63
SS18-214ENST00000580003 TPSG1Q9NRR2 321 aa11.09□□□□□ -0.63
SS18-214ENST00000580003 RNF19AQ9NV58 838 aa11.09□□□□□ -0.63
SS18-214ENST00000580003 ITGAEP38570 1179 aa11.08□□□□□ -0.64
SS18-214ENST00000580003 DAB2P98082 770 aa11.08□□□□□ -0.64
SS18-214ENST00000580003 TPTE2Q6XPS3 522 aa11.08□□□□□ -0.64
SS18-214ENST00000580003 TP53INP1Q96A56 240 aa11.08□□□□□ -0.64
SS18-214ENST00000580003 TRIM56Q9BRZ2 755 aaKnown RBP11.08□□□□□ -0.64
SS18-214ENST00000580003 NRSN2Q9GZP1 204 aa11.08□□□□□ -0.64
SS18-214ENST00000580003 BCL11AQ9H165 835 aa11.08□□□□□ -0.64
SS18-214ENST00000580003 MEGF11A6BM72 1044 aa11.07□□□□□ -0.64
SS18-214ENST00000580003 TAGLNQ01995 201 aaKnown RBP11.07□□□□□ -0.64
SS18-214ENST00000580003 EXOSC6Q5RKV6 272 aaKnown RBP11.07□□□□□ -0.64
SS18-214ENST00000580003 NUTM2GQ5VZR2 741 aa11.07□□□□□ -0.64
SS18-214ENST00000580003 ANKRD34AQ69YU3 496 aa11.07□□□□□ -0.64
SS18-214ENST00000580003 FDX2Q6P4F2 183 aa11.07□□□□□ -0.64
SS18-214ENST00000580003 GIPC2Q8TF65 315 aa11.07□□□□□ -0.64
SS18-214ENST00000580003 SSBP4Q9BWG4 385 aaPredicted RBP11.07□□□□□ -0.64
SS18-214ENST00000580003 MRS2Q9HD23 443 aa11.07□□□□□ -0.64
SS18-214ENST00000580003 SART1O43290 800 aaKnown RBP11.06□□□□□ -0.64
SS18-214ENST00000580003 TMC4Q7Z404 712 aa11.06□□□□□ -0.64
SS18-214ENST00000580003 DZIP1LQ8IYY4 767 aaKnown RBP11.06□□□□□ -0.64
SS18-214ENST00000580003 CYP4F12Q9HCS2 524 aa11.06□□□□□ -0.64
SS18-214ENST00000580003 TTF2Q9UNY4 1162 aaKnown RBP11.06□□□□□ -0.64
SS18-214ENST00000580003 HNRNPUQ00839 825 aaKnown RBP eCLIP11.05□□□□□ -0.64
SS18-214ENST00000580003 ANKRD24Q8TF21 1146 aa11.05□□□□□ -0.64
SS18-214ENST00000580003 FAM161BQ96MY7 647 aa11.05□□□□□ -0.64
SS18-214ENST00000580003 TMPRSS13Q9BYE2 586 aa11.05□□□□□ -0.64
SS18-214ENST00000580003 FBXO24O75426 580 aa11.04□□□□□ -0.64
SS18-214ENST00000580003 DLGAP3O95886 979 aa11.04□□□□□ -0.64
SS18-214ENST00000580003 PDE3AQ14432 1141 aa11.04□□□□□ -0.64
SS18-214ENST00000580003 NECAB3Q96P71 396 aaPredicted RBP11.04□□□□□ -0.64
SS18-214ENST00000580003 RAD18Q9NS91 495 aa11.04□□□□□ -0.64
SS18-214ENST00000580003 SAMM50Q9Y512 469 aa11.04□□□□□ -0.64
SS18-214ENST00000580003 SORBS3O60504 671 aa11.03□□□□□ -0.64
SS18-214ENST00000580003 SULF2Q8IWU5 870 aa11.03□□□□□ -0.64
SS18-214ENST00000580003 C12orf50Q8NA57 414 aaPredicted RBP11.03□□□□□ -0.64
SS18-214ENST00000580003 UBL7Q96S82 380 aaPredicted RBP11.03□□□□□ -0.64
SS18-214ENST00000580003 EMILIN2Q9BXX0 1053 aa11.03□□□□□ -0.64
SS18-214ENST00000580003 FURINP09958 794 aa11.02□□□□□ -0.65
SS18-214ENST00000580003 NME2P22392 152 aa11.02□□□□□ -0.65
SS18-214ENST00000580003 UVSSAQ2YD98 709 aa11.02□□□□□ -0.65
SS18-214ENST00000580003 SMG8Q8ND04 991 aaKnown RBP11.02□□□□□ -0.65
SS18-214ENST00000580003 SUGCTQ9HAC7 445 aa11.02□□□□□ -0.65
SS18-214ENST00000580003 VTI1BQ9UEU0 232 aa11.02□□□□□ -0.65
SS18-214ENST00000580003 GAS2O43903 313 aaKnown RBP11.01□□□□□ -0.65
SS18-214ENST00000580003 ECEL1O95672 775 aa11.01□□□□□ -0.65
SS18-214ENST00000580003 CTSBP07858 339 aa11.01□□□□□ -0.65
SS18-214ENST00000580003 GSTP1P09211 210 aaKnown RBP11.01□□□□□ -0.65
SS18-214ENST00000580003 ARNTP27540 789 aa11.01□□□□□ -0.65
SS18-214ENST00000580003 UTP4Q969X6 686 aaKnown RBP11.01□□□□□ -0.65
SS18-214ENST00000580003 ZC3H12CQ9C0D7 883 aaKnown RBP11.01□□□□□ -0.65
SS18-214ENST00000580003 RSPO4Q2I0M5 234 aaPredicted RBP11□□□□□ -0.65
SS18-214ENST00000580003 SV2BQ7L1I2 683 aa11□□□□□ -0.65
SS18-214ENST00000580003 KCNB2Q92953 911 aa11□□□□□ -0.65
SS18-214ENST00000580003 FAM46AQ96IP4 442 aaKnown RBP11□□□□□ -0.65
SS18-214ENST00000580003 CBX8Q9HC52 389 aa11□□□□□ -0.65
SS18-214ENST00000580003 ENC1O14682 589 aa10.99□□□□□ -0.65
SS18-214ENST00000580003 H2AFB1P0C5Y9 115 aa10.99□□□□□ -0.65
SS18-214ENST00000580003 H2AFB2P0C5Z0 115 aa10.99□□□□□ -0.65
SS18-214ENST00000580003 PREPP48147 710 aa10.99□□□□□ -0.65
SS18-214ENST00000580003 DHX15O43143 795 aaKnown RBP10.98□□□□□ -0.65
SS18-214ENST00000580003 CCDC85BQ15834 202 aaPredicted RBP10.98□□□□□ -0.65
SS18-214ENST00000580003 AKAP4Q5JQC9 854 aa10.98□□□□□ -0.65
SS18-214ENST00000580003 NKAPLQ5M9Q1 402 aa10.98□□□□□ -0.65
SS18-214ENST00000580003 CCDC86Q9H6F5 360 aaKnown RBP10.98□□□□□ -0.65
SS18-214ENST00000580003 KRT82Q9NSB4 513 aa10.98□□□□□ -0.65
SS18-214ENST00000580003 TIAF1O95411 115 aa10.97□□□□□ -0.65
SS18-214ENST00000580003 CELA3AP09093 270 aa10.97□□□□□ -0.65
SS18-214ENST00000580003 SOX4Q06945 474 aaPredicted RBP10.97□□□□□ -0.65
SS18-214ENST00000580003 PDZD3Q86UT5 571 aa10.97□□□□□ -0.65
SS18-214ENST00000580003 STK35Q8TDR2 534 aa10.97□□□□□ -0.65
SS18-214ENST00000580003 CRELD1Q96HD1 420 aa10.97□□□□□ -0.65
SS18-214ENST00000580003 CCDC9Q9Y3X0 531 aaKnown RBP10.97□□□□□ -0.65
SS18-214ENST00000580003 K7ELQ4 463 aaPredicted RBP10.96□□□□□ -0.65
SS18-214ENST00000580003 AOC2O75106 756 aa10.96□□□□□ -0.65
SS18-214ENST00000580003 PAGE1O75459 146 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms