RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MIGA1Q8NAN2 632 aa30.2■■■□□ 2.43
SHMT1-207ENST00000580002 LRRFIP1Q32MZ4 808 aaKnown RBP30.2■■■□□ 2.42
SHMT1-207ENST00000580002 TICAM2Q86XR7 235 aa30.2■■■□□ 2.42
SHMT1-207ENST00000580002 LARGE2Q8N3Y3 721 aa30.2■■■□□ 2.42
SHMT1-207ENST00000580002 SCN9AQ15858 1988 aa30.19■■■□□ 2.42
SHMT1-207ENST00000580002 CCDC171Q6TFL3 1326 aa30.19■■■□□ 2.42
SHMT1-207ENST00000580002 TAOK3Q9H2K8 898 aa30.19■■■□□ 2.42
SHMT1-207ENST00000580002 FOXP2O15409 715 aa30.18■■■□□ 2.42
SHMT1-207ENST00000580002 KIAA1211Q6ZU35 1233 aa30.18■■■□□ 2.42
SHMT1-207ENST00000580002 GPAA1O43292 621 aa30.18■■■□□ 2.42
SHMT1-207ENST00000580002 LDHBP07195 334 aaKnown RBP30.18■■■□□ 2.42
SHMT1-207ENST00000580002 IARSP41252 1262 aaKnown RBP30.18■■■□□ 2.42
SHMT1-207ENST00000580002 DIXDC1Q155Q3 683 aa30.18■■■□□ 2.42
SHMT1-207ENST00000580002 NAA16Q6N069 864 aaPredicted RBP30.18■■■□□ 2.42
SHMT1-207ENST00000580002 PALD1Q9ULE6 856 aa30.18■■■□□ 2.42
SHMT1-207ENST00000580002 FER1L6Q2WGJ9 1857 aa30.17■■■□□ 2.42
SHMT1-207ENST00000580002 ARMT1Q9H993 441 aa30.17■■■□□ 2.42
SHMT1-207ENST00000580002 F8W031 263 aaPredicted RBP30.16■■■□□ 2.42
SHMT1-207ENST00000580002 RBM25P49756 843 aaKnown RBP30.16■■■□□ 2.42
SHMT1-207ENST00000580002 DYNLL1P63167 89 aaKnown RBP30.16■■■□□ 2.42
SHMT1-207ENST00000580002 MAP4K1Q92918 833 aa30.15■■■□□ 2.42
SHMT1-207ENST00000580002 KIF2CQ99661 725 aa30.15■■■□□ 2.42
SHMT1-207ENST00000580002 MBD4O95243 580 aa30.15■■■□□ 2.42
SHMT1-207ENST00000580002 SPTY2D1Q68D10 685 aaPredicted RBP30.15■■■□□ 2.42
SHMT1-207ENST00000580002 LCORLQ8N3X6 602 aa30.15■■■□□ 2.42
SHMT1-207ENST00000580002 HSPD1P10809 573 aaKnown RBP30.14■■■□□ 2.42
SHMT1-207ENST00000580002 YBX3P16989 372 aaKnown RBP eCLIP30.14■■■□□ 2.42
SHMT1-207ENST00000580002 DACT2Q5SW24 774 aa30.14■■■□□ 2.42
SHMT1-207ENST00000580002 DZIP1Q86YF9 867 aaKnown RBP30.14■■■□□ 2.42
SHMT1-207ENST00000580002 ZGPATQ8N5A5 531 aaKnown RBP30.14■■■□□ 2.42
SHMT1-207ENST00000580002 STRBPQ96SI9 672 aaKnown RBP30.14■■■□□ 2.42
SHMT1-207ENST00000580002 PRKAB2O43741 272 aa30.13■■■□□ 2.41
SHMT1-207ENST00000580002 RAD17O75943 681 aa30.13■■■□□ 2.41
SHMT1-207ENST00000580002 RBM8AQ9Y5S9 174 aaKnown RBP30.13■■■□□ 2.41
SHMT1-207ENST00000580002 TBC1D22AQ8WUA7 517 aa30.13■■■□□ 2.41
SHMT1-207ENST00000580002 TAF6LQ9Y6J9 622 aa30.13■■■□□ 2.41
SHMT1-207ENST00000580002 USP17L3A6NCW0 530 aa30.12■■■□□ 2.41
SHMT1-207ENST00000580002 USP17L4A6NCW7 530 aa30.12■■■□□ 2.41
SHMT1-207ENST00000580002 ARHGAP27Q6ZUM4 889 aa30.12■■■□□ 2.41
SHMT1-207ENST00000580002 USP17L1Q7RTZ2 530 aa30.12■■■□□ 2.41
SHMT1-207ENST00000580002 AIDAQ96BJ3 306 aa30.12■■■□□ 2.41
SHMT1-207ENST00000580002 STRIP1Q5VSL9 837 aa30.11■■■□□ 2.41
SHMT1-207ENST00000580002 RASEFQ8IZ41 740 aa30.11■■■□□ 2.41
SHMT1-207ENST00000580002 RIOK1Q9BRS2 568 aaKnown RBP30.11■■■□□ 2.41
SHMT1-207ENST00000580002 ARFGEF1Q9Y6D6 1849 aa30.11■■■□□ 2.41
SHMT1-207ENST00000580002 HSPA4P34932 840 aa30.1■■■□□ 2.41
SHMT1-207ENST00000580002 AATFQ9NY61 560 aaKnown RBP eCLIP30.1■■■□□ 2.41
SHMT1-207ENST00000580002 SCNN1DP51172 638 aa30.1■■■□□ 2.41
SHMT1-207ENST00000580002 NECTIN1Q15223 517 aa30.1■■■□□ 2.41
SHMT1-207ENST00000580002 VPS33BQ9H267 617 aa30.1■■■□□ 2.41
SHMT1-207ENST00000580002 MAGEB6P1A0A0J9YX57 407 aa30.09■■■□□ 2.41
SHMT1-207ENST00000580002 NIM1KQ8IY84 436 aa30.09■■■□□ 2.41
SHMT1-207ENST00000580002 PSMD14O00487 310 aa30.08■■■□□ 2.41
SHMT1-207ENST00000580002 EIF5BO60841 1220 aaKnown RBP30.08■■■□□ 2.41
SHMT1-207ENST00000580002 ZNRF3Q9ULT6 936 aa30.08■■■□□ 2.41
SHMT1-207ENST00000580002 TTF2Q9UNY4 1162 aaKnown RBP30.08■■■□□ 2.41
SHMT1-207ENST00000580002 ZNF646O15015 1829 aaPredicted RBP30.08■■■□□ 2.41
SHMT1-207ENST00000580002 KIAA0825Q8IV33 1275 aa30.08■■■□□ 2.41
SHMT1-207ENST00000580002 LTBP3Q9NS15 1303 aa30.07■■■□□ 2.4
SHMT1-207ENST00000580002 DSCC1Q9BVC3 393 aa30.07■■■□□ 2.4
SHMT1-207ENST00000580002 PCDHAC2Q9Y5I4 1007 aa30.07■■■□□ 2.4
SHMT1-207ENST00000580002 CREB3L3Q68CJ9 461 aa30.06■■■□□ 2.4
SHMT1-207ENST00000580002 ZBTB12Q9Y330 459 aaPredicted RBP30.06■■■□□ 2.4
SHMT1-207ENST00000580002 SLC27A2O14975 620 aa30.05■■■□□ 2.4
SHMT1-207ENST00000580002 CXCL9Q07325 125 aa30.05■■■□□ 2.4
SHMT1-207ENST00000580002 COL9A3Q14050 684 aaPredicted RBP30.05■■■□□ 2.4
SHMT1-207ENST00000580002 SDR42E1Q8WUS8 393 aa30.05■■■□□ 2.4
SHMT1-207ENST00000580002 EPB41L4AQ9HCS5 686 aaPredicted RBP30.05■■■□□ 2.4
SHMT1-207ENST00000580002 SNX14Q9Y5W7 946 aa30.05■■■□□ 2.4
SHMT1-207ENST00000580002 GSG1L2A8MUP6 293 aa30.05■■■□□ 2.4
SHMT1-207ENST00000580002 FGAP02671 866 aa30.05■■■□□ 2.4
SHMT1-207ENST00000580002 SLC4A4Q9Y6R1 1079 aa30.05■■■□□ 2.4
SHMT1-207ENST00000580002 CCDC88AQ3V6T2 1871 aa30.04■■■□□ 2.4
SHMT1-207ENST00000580002 MROH7-TTC4A0A0A0MT08 1334 aa30.04■■■□□ 2.4
SHMT1-207ENST00000580002 EPB41L2O43491 1005 aaKnown RBP30.04■■■□□ 2.4
SHMT1-207ENST00000580002 APPP05067 770 aa30.03■■■□□ 2.4
SHMT1-207ENST00000580002 JDP2Q8WYK2 163 aa30.03■■■□□ 2.4
SHMT1-207ENST00000580002 VIL1P09327 827 aaKnown RBP30.03■■■□□ 2.4
SHMT1-207ENST00000580002 SH3RF3Q8TEJ3 882 aaPredicted RBP30.03■■■□□ 2.4
SHMT1-207ENST00000580002 DAGLAQ9Y4D2 1042 aa30.03■■■□□ 2.4
SHMT1-207ENST00000580002 MAST2Q6P0Q8 1798 aa30.02■■■□□ 2.4
SHMT1-207ENST00000580002 PATL2C9JE40 543 aaKnown RBP30.02■■■□□ 2.4
SHMT1-207ENST00000580002 CYP21A2P08686 494 aa30.02■■■□□ 2.4
SHMT1-207ENST00000580002 GSTO1P78417 241 aa30.02■■■□□ 2.4
SHMT1-207ENST00000580002 SUGT1Q9Y2Z0 365 aa30.02■■■□□ 2.4
SHMT1-207ENST00000580002 U3KPZ7 1027 aaPredicted RBP30.02■■■□□ 2.4
SHMT1-207ENST00000580002 MYH2Q9UKX2 1941 aa30.02■■■□□ 2.4
SHMT1-207ENST00000580002 MCCP23508 829 aa30.01■■■□□ 2.39
SHMT1-207ENST00000580002 BTDP43251 543 aa30.01■■■□□ 2.39
SHMT1-207ENST00000580002 FKBP1AP62942 108 aaKnown RBP30.01■■■□□ 2.39
SHMT1-207ENST00000580002 ADCK5Q3MIX3 580 aa30.01■■■□□ 2.39
SHMT1-207ENST00000580002 RSBN1LQ6PCB5 846 aaPredicted RBP30.01■■■□□ 2.39
SHMT1-207ENST00000580002 KCNB2Q92953 911 aa30.01■■■□□ 2.39
SHMT1-207ENST00000580002 HAND2P61296 217 aa30■■■□□ 2.39
SHMT1-207ENST00000580002 IFNL3Q8IZI9 196 aa30■■■□□ 2.39
SHMT1-207ENST00000580002 FAM163AQ96GL9 167 aaPredicted RBP30■■■□□ 2.39
SHMT1-207ENST00000580002 ADAMTSL1Q8N6G6 1762 aa30■■■□□ 2.39
SHMT1-207ENST00000580002 GAKO14976 1311 aa30■■■□□ 2.39
SHMT1-207ENST00000580002 GPR75-ASB3A0A0A6YYF3 556 aa30■■■□□ 2.39
SHMT1-207ENST00000580002 SMIM22K7EJ46 135 aa30■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms