RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 AKTIPQ9H8T0 292 aa9.32□□□□□ -0.92
NUP88-213ENST00000576862 ZFYVE1Q9HBF4 777 aa9.32□□□□□ -0.92
NUP88-213ENST00000576862 LOC100289279A0A1B0GTE1 492 aa9.31□□□□□ -0.92
NUP88-213ENST00000576862 MSTNO14793 375 aa9.31□□□□□ -0.92
NUP88-213ENST00000576862 DLGAP3O95886 979 aa9.31□□□□□ -0.92
NUP88-213ENST00000576862 EIF4BP23588 611 aaKnown RBP9.31□□□□□ -0.92
NUP88-213ENST00000576862 TMC4Q7Z404 712 aa9.31□□□□□ -0.92
NUP88-213ENST00000576862 GIPC2Q8TF65 315 aa9.31□□□□□ -0.92
NUP88-213ENST00000576862 IGHA1P01876 353 aa9.3□□□□□ -0.92
NUP88-213ENST00000576862 CTSBP07858 339 aa9.3□□□□□ -0.92
NUP88-213ENST00000576862 Q6ZS46 218 aa9.3□□□□□ -0.92
NUP88-213ENST00000576862 SSBP4Q9BWG4 385 aaPredicted RBP9.3□□□□□ -0.92
NUP88-213ENST00000576862 ECEL1O95672 775 aa9.29□□□□□ -0.92
NUP88-213ENST00000576862 XPCQ01831 940 aaPredicted RBP9.29□□□□□ -0.92
NUP88-213ENST00000576862 PSMD2Q13200 908 aa9.29□□□□□ -0.92
NUP88-213ENST00000576862 ANKRD24Q8TF21 1146 aa9.29□□□□□ -0.92
NUP88-213ENST00000576862 USP26Q9BXU7 913 aa9.29□□□□□ -0.92
NUP88-213ENST00000576862 PPM1HQ9ULR3 514 aa9.29□□□□□ -0.92
NUP88-213ENST00000576862 FBXO24O75426 580 aa9.28□□□□□ -0.92
NUP88-213ENST00000576862 CTSHP09668 335 aa9.28□□□□□ -0.92
NUP88-213ENST00000576862 MEGF10Q96KG7 1140 aa9.28□□□□□ -0.92
NUP88-213ENST00000576862 NECAB3Q96P71 396 aaPredicted RBP9.28□□□□□ -0.92
NUP88-213ENST00000576862 TMEM39AQ9NV64 488 aa9.28□□□□□ -0.92
NUP88-213ENST00000576862 GPN3Q9UHW5 284 aaPredicted RBP9.28□□□□□ -0.92
NUP88-213ENST00000576862 ENC1O14682 589 aa9.27□□□□□ -0.93
NUP88-213ENST00000576862 EIF4EBP3O60516 100 aaPredicted RBP9.27□□□□□ -0.93
NUP88-213ENST00000576862 CYP11A1P05108 521 aa9.27□□□□□ -0.93
NUP88-213ENST00000576862 ZNF16P17020 682 aaPredicted RBP9.27□□□□□ -0.93
NUP88-213ENST00000576862 MAOBP27338 520 aa9.27□□□□□ -0.93
NUP88-213ENST00000576862 POU4F3Q15319 338 aa9.27□□□□□ -0.93
NUP88-213ENST00000576862 TPTE2Q6XPS3 522 aa9.27□□□□□ -0.93
NUP88-213ENST00000576862 DZIP1LQ8IYY4 767 aaKnown RBP9.27□□□□□ -0.93
NUP88-213ENST00000576862 RGS22Q8NE09 1264 aa9.27□□□□□ -0.93
NUP88-213ENST00000576862 STK35Q8TDR2 534 aa9.27□□□□□ -0.93
NUP88-213ENST00000576862 MEGF11A6BM72 1044 aa9.26□□□□□ -0.93
NUP88-213ENST00000576862 DDX54Q8TDD1 881 aaKnown RBP9.26□□□□□ -0.93
NUP88-213ENST00000576862 UBL7Q96S82 380 aaPredicted RBP9.26□□□□□ -0.93
NUP88-213ENST00000576862 RUSC1Q9BVN2 902 aa9.26□□□□□ -0.93
NUP88-213ENST00000576862 TMPRSS13Q9BYE2 586 aa9.26□□□□□ -0.93
NUP88-213ENST00000576862 TPSG1Q9NRR2 321 aa9.26□□□□□ -0.93
NUP88-213ENST00000576862 PAGE1O75459 146 aa9.25□□□□□ -0.93
NUP88-213ENST00000576862 PPP2R3AQ06190 1150 aa9.25□□□□□ -0.93
NUP88-213ENST00000576862 AP3B2Q13367 1082 aa9.25□□□□□ -0.93
NUP88-213ENST00000576862 DOC2BQ14184 412 aa9.25□□□□□ -0.93
NUP88-213ENST00000576862 ZNF326Q5BKZ1 582 aaKnown RBP9.25□□□□□ -0.93
NUP88-213ENST00000576862 RNF208Q9H0X6 261 aa9.25□□□□□ -0.93
NUP88-213ENST00000576862 SORBS3O60504 671 aa9.24□□□□□ -0.93
NUP88-213ENST00000576862 GLB1P16278 677 aa9.24□□□□□ -0.93
NUP88-213ENST00000576862 MEI1Q5TIA1 1274 aa9.24□□□□□ -0.93
NUP88-213ENST00000576862 PDZD3Q86UT5 571 aa9.24□□□□□ -0.93
NUP88-213ENST00000576862 CORO1BQ9BR76 489 aa9.24□□□□□ -0.93
NUP88-213ENST00000576862 RBM47A0AV96 593 aaKnown RBP9.23□□□□□ -0.93
NUP88-213ENST00000576862 CELA3AP09093 270 aa9.23□□□□□ -0.93
NUP88-213ENST00000576862 EXOSC6Q5RKV6 272 aaKnown RBP9.23□□□□□ -0.93
NUP88-213ENST00000576862 SULF2Q8IWU5 870 aa9.23□□□□□ -0.93
NUP88-213ENST00000576862 CEP44Q9C0F1 390 aa9.23□□□□□ -0.93
NUP88-213ENST00000576862 TTF2Q9UNY4 1162 aaKnown RBP9.23□□□□□ -0.93
NUP88-213ENST00000576862 GSTP1P09211 210 aaKnown RBP9.22□□□□□ -0.93
NUP88-213ENST00000576862 BMP6P22004 513 aa9.22□□□□□ -0.93
NUP88-213ENST00000576862 NME2P22392 152 aa9.22□□□□□ -0.93
NUP88-213ENST00000576862 MRPL58Q14197 206 aaKnown RBP9.22□□□□□ -0.93
NUP88-213ENST00000576862 RASIP1Q5U651 963 aa9.22□□□□□ -0.93
NUP88-213ENST00000576862 SUGCTQ9HAC7 445 aa9.22□□□□□ -0.93
NUP88-213ENST00000576862 TIAF1O95411 115 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 ARNTP27540 789 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 PREPP48147 710 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 ANKRD34AQ69YU3 496 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 SMG8Q8ND04 991 aaKnown RBP9.21□□□□□ -0.94
NUP88-213ENST00000576862 TP53INP1Q96A56 240 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 CRELD1Q96HD1 420 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 FAM46AQ96IP4 442 aaKnown RBP9.21□□□□□ -0.94
NUP88-213ENST00000576862 ZC3H12CQ9C0D7 883 aaKnown RBP9.21□□□□□ -0.94
NUP88-213ENST00000576862 CCDC86Q9H6F5 360 aaKnown RBP9.21□□□□□ -0.94
NUP88-213ENST00000576862 MRS2Q9HD23 443 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 VTI1BQ9UEU0 232 aa9.21□□□□□ -0.94
NUP88-213ENST00000576862 CCDC9Q9Y3X0 531 aaKnown RBP9.21□□□□□ -0.94
NUP88-213ENST00000576862 ZNF252P-AS1Q0IIN9 211 aa9.2□□□□□ -0.94
NUP88-213ENST00000576862 NKAPLQ5M9Q1 402 aa9.2□□□□□ -0.94
NUP88-213ENST00000576862 NUTM2GQ5VZR2 741 aa9.2□□□□□ -0.94
NUP88-213ENST00000576862 SV2BQ7L1I2 683 aa9.2□□□□□ -0.94
NUP88-213ENST00000576862 ARMC10Q8N2F6 343 aa9.2□□□□□ -0.94
NUP88-213ENST00000576862 WDR89Q96FK6 387 aaPredicted RBP9.2□□□□□ -0.94
NUP88-213ENST00000576862 CEP41Q9BYV8 373 aa9.2□□□□□ -0.94
NUP88-213ENST00000576862 USP31Q70CQ4 1352 aa9.2□□□□□ -0.94
NUP88-213ENST00000576862 ZNF862O60290 1169 aa9.19□□□□□ -0.94
NUP88-213ENST00000576862 TAF1CQ15572 869 aaPredicted RBP9.19□□□□□ -0.94
NUP88-213ENST00000576862 RSPO4Q2I0M5 234 aaPredicted RBP9.19□□□□□ -0.94
NUP88-213ENST00000576862 MPRIPQ6WCQ1 1025 aa9.19□□□□□ -0.94
NUP88-213ENST00000576862 WDR18Q9BV38 432 aa9.19□□□□□ -0.94
NUP88-213ENST00000576862 FURINP09958 794 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 DRD2P14416 443 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 ST13P50502 369 aaKnown RBP9.18□□□□□ -0.94
NUP88-213ENST00000576862 PDE3AQ14432 1141 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 CCDC85BQ15834 202 aaPredicted RBP9.18□□□□□ -0.94
NUP88-213ENST00000576862 FDX2Q6P4F2 183 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 GRIN3AQ8TCU5 1115 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 CYP4F12Q9HCS2 524 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 CACNA2D2Q9NY47 1150 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 PODXL2Q9NZ53 605 aa9.18□□□□□ -0.94
NUP88-213ENST00000576862 AOC2O75106 756 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms