RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 PTPN12Q05209 780 aaKnown RBP17.15■□□□□ 0.34
CCDC40-216ENST00000576241 SREBF2Q12772 1141 aa17.15■□□□□ 0.34
CCDC40-216ENST00000576241 SUPT20HL1Q3ZLR7 823 aa17.15■□□□□ 0.34
CCDC40-216ENST00000576241 SERPINA10Q9UK55 444 aa17.15■□□□□ 0.34
CCDC40-216ENST00000576241 TTF2Q9UNY4 1162 aaKnown RBP17.15■□□□□ 0.34
CCDC40-216ENST00000576241 TRMT2AQ8IZ69 625 aaKnown RBP17.14■□□□□ 0.33
CCDC40-216ENST00000576241 KLHDC4Q8TBB5 520 aa17.14■□□□□ 0.33
CCDC40-216ENST00000576241 UBTFL1P0CB47 393 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-216ENST00000576241 CHAF1AQ13111 956 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-216ENST00000576241 TNFAIP1Q13829 316 aa17.13■□□□□ 0.33
CCDC40-216ENST00000576241 PUM3Q15397 648 aaKnown RBP17.13■□□□□ 0.33
CCDC40-216ENST00000576241 LDLRAD1Q5T700 205 aa17.13■□□□□ 0.33
CCDC40-216ENST00000576241 FBXO33Q7Z6M2 555 aa17.13■□□□□ 0.33
CCDC40-216ENST00000576241 VGLL2Q8N8G2 317 aa17.13■□□□□ 0.33
CCDC40-216ENST00000576241 TBC1D22AQ8WUA7 517 aa17.13■□□□□ 0.33
CCDC40-216ENST00000576241 ARMC5Q96C12 935 aa17.13■□□□□ 0.33
CCDC40-216ENST00000576241 IQSEC3Q9UPP2 1182 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-216ENST00000576241 PTPN22Q9Y2R2 807 aa17.13■□□□□ 0.33
CCDC40-216ENST00000576241 IFIT1P09914 478 aaKnown RBP17.12■□□□□ 0.33
CCDC40-216ENST00000576241 RASA3Q14644 834 aa17.12■□□□□ 0.33
CCDC40-216ENST00000576241 CHRDL2Q6WN34 429 aa17.12■□□□□ 0.33
CCDC40-216ENST00000576241 SLC10A4Q96EP9 437 aa17.12■□□□□ 0.33
CCDC40-216ENST00000576241 API5Q9BZZ5 524 aaKnown RBP17.12■□□□□ 0.33
CCDC40-216ENST00000576241 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
CCDC40-216ENST00000576241 COL6A3P12111 3177 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 CRKP46108 304 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 MAP3K11Q16584 847 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 SPDYE2Q495Y8 402 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 SPRYD7Q5W111 196 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 DZIP1LQ8IYY4 767 aaKnown RBP17.11■□□□□ 0.33
CCDC40-216ENST00000576241 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-216ENST00000576241 ZNF70Q9UC06 446 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-216ENST00000576241 FZD1Q9UP38 647 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 HDAC5Q9UQL6 1122 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 AOX1Q06278 1338 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 KIF16BQ96L93 1317 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 SSC5DA1L4H1 1573 aa17.11■□□□□ 0.33
CCDC40-216ENST00000576241 UNCXA6NJT0 531 aa17.1■□□□□ 0.33
CCDC40-216ENST00000576241 EYA2O00167 538 aa17.1■□□□□ 0.33
CCDC40-216ENST00000576241 ALDH1A1P00352 501 aa17.1■□□□□ 0.33
CCDC40-216ENST00000576241 IREB2P48200 963 aaKnown RBP17.1■□□□□ 0.33
CCDC40-216ENST00000576241 NBPF12Q5TAG4 269 aaPredicted RBP17.1■□□□□ 0.33
CCDC40-216ENST00000576241 TMEM106CQ9BVX2 250 aa17.1■□□□□ 0.33
CCDC40-216ENST00000576241 TDRD3Q9H7E2 651 aaKnown RBP17.1■□□□□ 0.33
CCDC40-216ENST00000576241 RBM27Q9P2N5 1060 aaKnown RBP17.1■□□□□ 0.33
CCDC40-216ENST00000576241 RANBP2P49792 3224 aaKnown RBP17.1■□□□□ 0.33
CCDC40-216ENST00000576241 SLC5A1P13866 664 aa17.09■□□□□ 0.33
CCDC40-216ENST00000576241 RFX5P48382 616 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-216ENST00000576241 TNNI2P48788 182 aa17.09■□□□□ 0.33
CCDC40-216ENST00000576241 BCAMP50895 628 aa17.09■□□□□ 0.33
CCDC40-216ENST00000576241 ECM29Q5VYK3 1845 aa17.09■□□□□ 0.33
CCDC40-216ENST00000576241 MAST3O60307 1309 aa17.08■□□□□ 0.32
CCDC40-216ENST00000576241 MANSC4A6NHS7 340 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-216ENST00000576241 ZBTB48P10074 688 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-216ENST00000576241 FGFR2P21802 821 aa17.08■□□□□ 0.32
CCDC40-216ENST00000576241 INHBEP58166 350 aa17.08■□□□□ 0.32
CCDC40-216ENST00000576241 HDLBPQ00341 1268 aaKnown RBP17.08■□□□□ 0.32
CCDC40-216ENST00000576241 CD99L2Q8TCZ2 262 aa17.08■□□□□ 0.32
CCDC40-216ENST00000576241 LPIN2Q92539 896 aa17.08■□□□□ 0.32
CCDC40-216ENST00000576241 TEKT1Q969V4 418 aa17.08■□□□□ 0.32
CCDC40-216ENST00000576241 CLMNQ96JQ2 1002 aa17.08■□□□□ 0.32
CCDC40-216ENST00000576241 ARAP2Q8WZ64 1704 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 TCP10L2B9ZVM9 353 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 RARSP54136 660 aaKnown RBP17.07■□□□□ 0.32
CCDC40-216ENST00000576241 ANKRD13AQ8IZ07 590 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 ERO1AQ96HE7 468 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 WNK4Q96J92 1243 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 SIL1Q9H173 461 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 FBXO3Q9UK99 471 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 SUGT1Q9Y2Z0 365 aa17.07■□□□□ 0.32
CCDC40-216ENST00000576241 USP2O75604 605 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-216ENST00000576241 CIAO1O76071 339 aa17.06■□□□□ 0.32
CCDC40-216ENST00000576241 GRIK5Q16478 980 aa17.06■□□□□ 0.32
CCDC40-216ENST00000576241 ATG9AQ7Z3C6 839 aa17.06■□□□□ 0.32
CCDC40-216ENST00000576241 IFNL1Q8IU54 200 aa17.06■□□□□ 0.32
CCDC40-216ENST00000576241 ZNF333Q96JL9 665 aa17.06■□□□□ 0.32
CCDC40-216ENST00000576241 TMOD2Q9NZR1 351 aa17.06■□□□□ 0.32
CCDC40-216ENST00000576241 CEP126Q9P2H0 1117 aa17.06■□□□□ 0.32
CCDC40-216ENST00000576241 LRRFIP2Q9Y608 721 aaKnown RBP17.06■□□□□ 0.32
CCDC40-216ENST00000576241 ATP2B3Q16720 1220 aa17.05■□□□□ 0.32
CCDC40-216ENST00000576241 WDR66Q8TBY9 1149 aa17.05■□□□□ 0.32
CCDC40-216ENST00000576241 ZDHHC15Q96MV8 337 aa17.05■□□□□ 0.32
CCDC40-216ENST00000576241 TMEM39BQ9GZU3 492 aa17.05■□□□□ 0.32
CCDC40-216ENST00000576241 EFCC1Q9HA90 598 aa17.05■□□□□ 0.32
CCDC40-216ENST00000576241 MNX1P50219 401 aaPredicted RBP17.04■□□□□ 0.32
CCDC40-216ENST00000576241 CAP1Q01518 475 aa17.04■□□□□ 0.32
CCDC40-216ENST00000576241 ARHGAP45Q92619 1136 aa17.04■□□□□ 0.32
CCDC40-216ENST00000576241 MRIQ9BWK5 157 aa17.04■□□□□ 0.32
CCDC40-216ENST00000576241 GNL3LQ9NVN8 582 aaKnown RBP17.04■□□□□ 0.32
CCDC40-216ENST00000576241 IGF2BP3O00425 579 aaKnown RBP eCLIP17.03■□□□□ 0.32
CCDC40-216ENST00000576241 IPO8O15397 1037 aaKnown RBP17.03■□□□□ 0.32
CCDC40-216ENST00000576241 IL15P40933 162 aaPredicted RBP17.03■□□□□ 0.32
CCDC40-216ENST00000576241 SLC4A8Q2Y0W8 1093 aa17.03■□□□□ 0.32
CCDC40-216ENST00000576241 OTUD7BQ6GQQ9 843 aa17.03■□□□□ 0.32
CCDC40-216ENST00000576241 TEPSINQ96N21 525 aa17.03■□□□□ 0.32
CCDC40-216ENST00000576241 MEIS3Q99687 375 aa17.03■□□□□ 0.32
CCDC40-216ENST00000576241 MYCP01106 439 aaPredicted RBP17.02■□□□□ 0.32
CCDC40-216ENST00000576241 GNAI3P08754 354 aa17.02■□□□□ 0.32
CCDC40-216ENST00000576241 CACNB3P54284 484 aa17.02■□□□□ 0.32
CCDC40-216ENST00000576241 CDAN1Q8IWY9 1227 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms