RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 A0A0C4DFX4 3053 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 GNRH1P01148 92 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 FSHRP23945 695 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 EXOC8Q8IYI6 725 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 ZDHHC1Q8WTX9 485 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 SEC16BQ96JE7 1060 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 DEPDC7Q96QD5 511 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 MYH16Q9H6N6 1097 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 EFR3BQ9Y2G0 817 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 PARP3Q9Y6F1 533 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 PLEKHG1Q9ULL1 1385 aa7.82□□□□□ -1.16
VPS53-219ENST00000576019 C1orf167Q5SNV9 1468 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 PRXQ9BXM0 1461 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 ADGRL3Q9HAR2 1447 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 FAM221BA6H8Z2 402 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 GIPC1O14908 333 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 PPP1R12AO14974 1030 aaPredicted RBP7.81□□□□□ -1.16
VPS53-219ENST00000576019 U2SURPO15042 1029 aaKnown RBP7.81□□□□□ -1.16
VPS53-219ENST00000576019 PEX14O75381 377 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 S100BP04271 92 aaPredicted RBP7.81□□□□□ -1.16
VPS53-219ENST00000576019 NOS2P35228 1153 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 RASA3Q14644 834 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 ARID5BQ14865 1188 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 PLEKHG4Q58EX7 1191 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 GORABQ5T7V8 394 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 KANSL2Q9H9L4 492 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 FANCLQ9NW38 375 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 DDX56Q9NY93 547 aaKnown RBP7.81□□□□□ -1.16
VPS53-219ENST00000576019 FAN1Q9Y2M0 1017 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 CFAP65Q6ZU64 1925 aaKnown RBP7.81□□□□□ -1.16
VPS53-219ENST00000576019 TULP4Q9NRJ4 1543 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 PIK3R4Q99570 1358 aa7.81□□□□□ -1.16
VPS53-219ENST00000576019 FOXN1O15353 648 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 CDC45O75419 566 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 IL2RAP01589 272 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 CHMP4BP1P59074 171 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 FSTL1Q12841 308 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 STAG1Q8WVM7 1258 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 PHACTR1Q9C0D0 580 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 SLKQ9H2G2 1235 aaPredicted RBP7.8□□□□□ -1.16
VPS53-219ENST00000576019 ADAMTS1Q9UHI8 967 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 DHX57Q6P158 1386 aaKnown RBP7.8□□□□□ -1.16
VPS53-219ENST00000576019 NRAPQ86VF7 1730 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 PLEKHH2Q8IVE3 1493 aa7.8□□□□□ -1.16
VPS53-219ENST00000576019 CDK2AP1O14519 115 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 KLF4O43474 513 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 LILRA1O75019 489 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 S1PR4O95977 384 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 HIRAP54198 1017 aaPredicted RBP7.79□□□□□ -1.16
VPS53-219ENST00000576019 AMPD3Q01432 767 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 RAB33AQ14088 237 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 NXPE4Q6UWF7 544 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 SH3TC2Q8TF17 1288 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 NPHS2Q9NP85 383 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 GINM1Q9NU53 330 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 CABP1Q9NZU7 370 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 PRKAB1Q9Y478 270 aa7.79□□□□□ -1.16
VPS53-219ENST00000576019 CCDC194A0A1B0GVG4 234 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 TNFRSF21O75509 655 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 WNT7BP56706 349 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 TEAD4Q15561 434 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 NBPF15Q8N660 670 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 NLGN2Q8NFZ4 835 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 L3MBTL2Q969R5 705 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 GABBR1Q9UBS5 961 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 TTF2Q9UNY4 1162 aaKnown RBP7.78□□□□□ -1.16
VPS53-219ENST00000576019 PXDNQ92626 1479 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 EHBP1L1Q8N3D4 1523 aa7.78□□□□□ -1.16
VPS53-219ENST00000576019 ADGRL2O95490 1459 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 MINDY4BA8MYZ0 360 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 POLR3DP05423 398 aaPredicted RBP7.77□□□□□ -1.17
VPS53-219ENST00000576019 VARSP26640 1264 aaKnown RBP7.77□□□□□ -1.17
VPS53-219ENST00000576019 DHX9Q08211 1270 aaKnown RBP7.77□□□□□ -1.17
VPS53-219ENST00000576019 CBLBQ13191 982 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 TJAP1Q5JTD0 557 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 TMED8Q6PL24 325 aaPredicted RBP7.77□□□□□ -1.17
VPS53-219ENST00000576019 ANAPC16Q96DE5 110 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 XAGE2Q96GT9 111 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 MTRQ99707 1265 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 BCO2Q9BYV7 579 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 ADAMTS13Q76LX8 1427 aa7.77□□□□□ -1.17
VPS53-219ENST00000576019 FYCO1Q9BQS8 1478 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 ADD1P35611 737 aaKnown RBP7.76□□□□□ -1.17
VPS53-219ENST00000576019 SNX29Q8TEQ0 813 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 ZNF516Q92618 1163 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 CNKSR1Q969H4 720 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 EAF1Q96JC9 268 aaPredicted RBP7.76□□□□□ -1.17
VPS53-219ENST00000576019 TRIM56Q9BRZ2 755 aaKnown RBP7.76□□□□□ -1.17
VPS53-219ENST00000576019 BCS1LQ9Y276 419 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 ZFYVE9O95405 1425 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 ARHGAP31Q2M1Z3 1444 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 PRAG1Q86YV5 1406 aa7.76□□□□□ -1.17
VPS53-219ENST00000576019 NALCNQ8IZF0 1738 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 ESYT3A0FGR9 886 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 GADD45BO75293 160 aaPredicted RBP7.75□□□□□ -1.17
VPS53-219ENST00000576019 RPLP1P05386 114 aaKnown RBP7.75□□□□□ -1.17
VPS53-219ENST00000576019 CTCFP49711 727 aaPredicted RBP7.75□□□□□ -1.17
VPS53-219ENST00000576019 KCNC4Q03721 635 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 CPLX3Q8WVH0 158 aa7.75□□□□□ -1.17
VPS53-219ENST00000576019 JDP2Q8WYK2 163 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms