RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 RBM5P52756 815 aaKnown RBP eCLIP11.67□□□□□ -0.54
CCDC40-214ENST00000575431 IRX6P78412 446 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-214ENST00000575431 GSTO1P78417 241 aa11.67□□□□□ -0.54
CCDC40-214ENST00000575431 SCARF1Q14162 830 aa11.67□□□□□ -0.54
CCDC40-214ENST00000575431 TTF1Q15361 905 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-214ENST00000575431 CFAP100Q494V2 611 aa11.67□□□□□ -0.54
CCDC40-214ENST00000575431 ANKRD45Q5TZF3 282 aa11.67□□□□□ -0.54
CCDC40-214ENST00000575431 CNTROBQ8N137 903 aa11.67□□□□□ -0.54
CCDC40-214ENST00000575431 ZBED3Q96IU2 234 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-214ENST00000575431 ECHDC1Q9NTX5 307 aa11.67□□□□□ -0.54
CCDC40-214ENST00000575431 TLR7Q9NYK1 1049 aaKnown RBP11.67□□□□□ -0.54
CCDC40-214ENST00000575431 COL1A1P02452 1464 aaPredicted RBP11.67□□□□□ -0.54
CCDC40-214ENST00000575431 TTC41PQ6P2S7 1318 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 SPDYE2BA6NHP3 402 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 ITGBL1O95965 494 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-214ENST00000575431 EGFRP00533 1210 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 POTEIP0CG38 1075 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 POTEJP0CG39 1038 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 SPDYE6P0CI01 402 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 ATP5JP18859 108 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 DZIP1Q86YF9 867 aaKnown RBP11.66□□□□□ -0.54
CCDC40-214ENST00000575431 SULF1Q8IWU6 871 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 FAM163AQ96GL9 167 aaPredicted RBP11.66□□□□□ -0.54
CCDC40-214ENST00000575431 ZDHHC15Q96MV8 337 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 LRP2BPQ9P2M1 347 aa11.66□□□□□ -0.54
CCDC40-214ENST00000575431 AKAP11Q9UKA4 1901 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 ERC2O15083 957 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 SMARCA5O60264 1052 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-214ENST00000575431 IGHDP01880 384 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 PRDX5P30044 214 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 ZAP70P43403 619 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 TNFAIP1Q13829 316 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 NBPF9Q3BBW0 867 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 ANGEL2Q5VTE6 544 aaKnown RBP11.65□□□□□ -0.54
CCDC40-214ENST00000575431 MAP1SQ66K74 1059 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-214ENST00000575431 APOBEC3FQ8IUX4 373 aaKnown RBP11.65□□□□□ -0.54
CCDC40-214ENST00000575431 PRMT6Q96LA8 375 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-214ENST00000575431 GGA3Q9NZ52 723 aa11.65□□□□□ -0.54
CCDC40-214ENST00000575431 ECM29Q5VYK3 1845 aa11.65□□□□□ -0.55
CCDC40-214ENST00000575431 MAP4K4O95819 1239 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-214ENST00000575431 CYP2E1P05181 493 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-214ENST00000575431 GRIK5Q16478 980 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 ERICH6BQ5W0A0 696 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 KRT26Q7Z3Y9 468 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 BCL11AQ9H165 835 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 SNRKQ9NRH2 765 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 TMOD2Q9NZR1 351 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 RAI14Q9P0K7 980 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 PPP2R3BQ9Y5P8 575 aa11.64□□□□□ -0.55
CCDC40-214ENST00000575431 PASKQ96RG2 1323 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 GLRX3O76003 335 aaKnown RBP11.63□□□□□ -0.55
CCDC40-214ENST00000575431 TNNI2P48788 182 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 NUCB1Q02818 461 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 MECOMQ03112 1051 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 MAP3K12Q12852 859 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 SPDYE2Q495Y8 402 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 FKBP1CQ5VVH2 108 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 PI16Q6UXB8 463 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 TBC1D9Q6ZT07 1266 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 CERS3Q8IU89 383 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 NSUN4Q96CB9 384 aaKnown RBP11.63□□□□□ -0.55
CCDC40-214ENST00000575431 HAUS7Q99871 368 aa11.63□□□□□ -0.55
CCDC40-214ENST00000575431 GAKO14976 1311 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 HSPA6P17066 643 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 MX1P20591 662 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 APLP1P51693 650 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 NAA16Q6N069 864 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-214ENST00000575431 APOBEC3HQ6NTF7 200 aaKnown RBP11.62□□□□□ -0.55
CCDC40-214ENST00000575431 USP48Q86UV5 1035 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 CHD1LQ86WJ1 897 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 NOL10Q9BSC4 688 aaKnown RBP11.62□□□□□ -0.55
CCDC40-214ENST00000575431 GLIS2Q9BZE0 524 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-214ENST00000575431 BOLA2Q9H3K6 86 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 PAG1Q9NWQ8 432 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 ZNF70Q9UC06 446 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-214ENST00000575431 DAGLAQ9Y4D2 1042 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 MAST2Q6P0Q8 1798 aa11.62□□□□□ -0.55
CCDC40-214ENST00000575431 MROH7-TTC4A0A0A0MT08 1334 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 MYH2Q9UKX2 1941 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 GPR75-ASB3A0A0A6YYF3 556 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 IDH1O75874 414 aaKnown RBP11.61□□□□□ -0.55
CCDC40-214ENST00000575431 BAG3O95817 575 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 PLCG2P16885 1265 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 NF2P35240 595 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 DIXDC1Q155Q3 683 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 LRRFIP1Q32MZ4 808 aaKnown RBP11.61□□□□□ -0.55
CCDC40-214ENST00000575431 B4GALNT3Q6L9W6 998 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 ZSCAN25Q6NSZ9 544 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 DNAJC2Q99543 621 aaKnown RBP11.61□□□□□ -0.55
CCDC40-214ENST00000575431 LNPKQ9C0E8 428 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.61□□□□□ -0.55
CCDC40-214ENST00000575431 TDRD3Q9H7E2 651 aaKnown RBP11.61□□□□□ -0.55
CCDC40-214ENST00000575431 PIH1D3Q9NQM4 214 aaKnown RBP11.61□□□□□ -0.55
CCDC40-214ENST00000575431 STAP2Q9UGK3 403 aa11.61□□□□□ -0.55
CCDC40-214ENST00000575431 ASTN2O75129 1339 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-214ENST00000575431 DOCK2Q92608 1830 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 POLR2AP24928 1970 aaKnown RBP11.6□□□□□ -0.55
CCDC40-214ENST00000575431 CLRN2A0PK11 232 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 TMEM88BA6NKF7 163 aa11.6□□□□□ -0.55
CCDC40-214ENST00000575431 GOLIM4O00461 696 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms