RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 PRDM11Q9NQV5 511 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 ERLIN1O75477 346 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 SART3Q15020 963 aaKnown RBP11.06□□□□□ -0.64
CCDC40-212ENST00000574799 STK38Q15208 465 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 XPO4Q9C0E2 1151 aaKnown RBP11.06□□□□□ -0.64
CCDC40-212ENST00000574799 TPCN1Q9ULQ1 816 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 CSB-PGBD3P0DP91 1061 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 H2AFXP16104 143 aaPredicted RBP11.06□□□□□ -0.64
CCDC40-212ENST00000574799 MICALL1Q8N3F8 863 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 TTC14Q96N46 770 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 ZNF396Q96N95 335 aaPredicted RBP11.06□□□□□ -0.64
CCDC40-212ENST00000574799 ACBD3Q9H3P7 528 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 LCMT1Q9UIC8 334 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 ADAM21Q9UKJ8 722 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 BCORQ6W2J9 1755 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 TCHHQ07283 1943 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 JCADQ9P266 1359 aa11.06□□□□□ -0.64
CCDC40-212ENST00000574799 CHGBP05060 677 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 CCZ1BP86790 482 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 CCZ1P86791 482 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 BCL9O00512 1426 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 ERVV-2B6SEH9 535 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 H0YHG0 523 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 TOP1P11387 765 aaKnown RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 PTH1RQ03431 593 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 PTPN12Q05209 780 aaKnown RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 LRRFIP1Q32MZ4 808 aaKnown RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 HSP90AB4PQ58FF6 505 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 FBXO18Q8NFZ0 1043 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 LSG1Q9H089 658 aaKnown RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 LRP5O75197 1615 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 ARAP2Q8WZ64 1704 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 A1BGP04217 495 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 IL2RBP14784 551 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 ACTN2P35609 894 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 PPP2R3AQ06190 1150 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 DHX8Q14562 1220 aaKnown RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 SRLQ86TD4 932 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 CCDC12Q8WUD4 166 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 MYD88Q99836 296 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 CCDC9Q9Y3X0 531 aaKnown RBP11.05□□□□□ -0.64
CCDC40-212ENST00000574799 LAMB2P55268 1798 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 SPEF2Q9C093 1822 aa11.05□□□□□ -0.64
CCDC40-212ENST00000574799 HSP90AA4PQ58FG1 418 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 TOM1L2Q6ZVM7 507 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 ZNF831Q5JPB2 1677 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 JAK2O60674 1132 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 ANKRD13DQ6ZTN6 518 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 EFCAB8A8MWE9 144 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 TUBB4AP04350 444 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 MUM1L1Q5H9M0 696 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 CCDC158Q5M9N0 1113 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 CREB3L3Q68CJ9 461 aa11.04□□□□□ -0.64
CCDC40-212ENST00000574799 PUF60Q9UHX1 559 aaKnown RBP11.04□□□□□ -0.64
CCDC40-212ENST00000574799 IBSPP21815 317 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-212ENST00000574799 CABP4P57796 275 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 E4F1Q66K89 784 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-212ENST00000574799 PIGBQ92521 554 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 GOLGA1Q92805 767 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 PGBD1Q96JS3 809 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 LRRC2Q9BYS8 371 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 MYH7P12883 1935 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 UBASH3AP57075 661 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 AACSQ86V21 672 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 PPM1EQ8WY54 764 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 SNRKQ9NRH2 765 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 C9orf78Q9NZ63 289 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-212ENST00000574799 PSDA5PKW4 1024 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-212ENST00000574799 ATP5J2-PTCD1G3V325 749 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 PTCD1O75127 700 aaKnown RBP11.03□□□□□ -0.64
CCDC40-212ENST00000574799 KARSQ15046 597 aaKnown RBP11.03□□□□□ -0.64
CCDC40-212ENST00000574799 AXDND1Q5T1B0 1012 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-212ENST00000574799 SARM1Q6SZW1 724 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 KLHL34Q8N239 644 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 EXOC4Q96A65 974 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 PDE11AQ9HCR9 933 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 IMPACTQ9P2X3 320 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 ASAP1Q9ULH1 1129 aa11.03□□□□□ -0.64
CCDC40-212ENST00000574799 H7C1W4 665 aa11.02□□□□□ -0.64
CCDC40-212ENST00000574799 SLC3A2P08195 630 aaKnown RBP11.02□□□□□ -0.64
CCDC40-212ENST00000574799 PLEKHA4Q9H4M7 779 aa11.02□□□□□ -0.64
CCDC40-212ENST00000574799 ATG3Q9NT62 314 aa11.02□□□□□ -0.64
CCDC40-212ENST00000574799 BTG4Q9NY30 223 aa11.02□□□□□ -0.64
CCDC40-212ENST00000574799 CC2D1AQ6P1N0 951 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-212ENST00000574799 SYNE3Q6ZMZ3 975 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 CCDC91Q7Z6B0 441 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 GPR161Q8N6U8 529 aaKnown RBP11.02□□□□□ -0.65
CCDC40-212ENST00000574799 BANK1Q8NDB2 785 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 ZSCAN16Q9H4T2 348 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-212ENST00000574799 TAF6LQ9Y6J9 622 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 TTC41PQ6P2S7 1318 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 A0A1B0GVL5 298 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 CBFA2T2O43439 604 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 IQCB1Q15051 598 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 PTPN21Q16825 1174 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 OLFM4Q6UX06 510 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 ATG9AQ7Z3C6 839 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 PLBD2Q8NHP8 589 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 FTOQ9C0B1 505 aaKnown RBP eCLIP11.02□□□□□ -0.65
CCDC40-212ENST00000574799 ZSWIM6Q9HCJ5 1215 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms