RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 MXD3Q9BW11 206 aa28.94■■■□□ 2.22
ATPAF1-213ENST00000574428 PUS7LQ9H0K6 701 aaKnown RBP28.94■■■□□ 2.22
ATPAF1-213ENST00000574428 UPF2Q9HAU5 1272 aaKnown RBP28.94■■■□□ 2.22
ATPAF1-213ENST00000574428 NSUN4Q96CB9 384 aaKnown RBP28.93■■■□□ 2.22
ATPAF1-213ENST00000574428 EIF5BO60841 1220 aaKnown RBP28.93■■■□□ 2.22
ATPAF1-213ENST00000574428 DZIP1Q86YF9 867 aaKnown RBP28.93■■■□□ 2.22
ATPAF1-213ENST00000574428 NIM1KQ8IY84 436 aa28.93■■■□□ 2.22
ATPAF1-213ENST00000574428 CERS5Q8N5B7 392 aa28.93■■■□□ 2.22
ATPAF1-213ENST00000574428 YBX3P16989 372 aaKnown RBP eCLIP28.92■■■□□ 2.225e-6■■■□□ 19.1
ATPAF1-213ENST00000574428 CYP7A1P22680 504 aa28.92■■■□□ 2.22
ATPAF1-213ENST00000574428 NAA16Q6N069 864 aaPredicted RBP28.92■■■□□ 2.22
ATPAF1-213ENST00000574428 ARHGAP27Q6ZUM4 889 aa28.92■■■□□ 2.22
ATPAF1-213ENST00000574428 ZNF646O15015 1829 aaPredicted RBP28.92■■■□□ 2.22
ATPAF1-213ENST00000574428 PRELPP51888 382 aa28.91■■■□□ 2.22
ATPAF1-213ENST00000574428 ADGRA1Q86SQ6 560 aa28.91■■■□□ 2.22
ATPAF1-213ENST00000574428 CCDC88AQ3V6T2 1871 aa28.91■■■□□ 2.22
ATPAF1-213ENST00000574428 CCDC171Q6TFL3 1326 aa28.91■■■□□ 2.22
ATPAF1-213ENST00000574428 USP17L3A6NCW0 530 aa28.9■■■□□ 2.22
ATPAF1-213ENST00000574428 USP17L4A6NCW7 530 aa28.9■■■□□ 2.22
ATPAF1-213ENST00000574428 STRIP1Q5VSL9 837 aa28.9■■■□□ 2.22
ATPAF1-213ENST00000574428 KIAA1211Q6ZU35 1233 aa28.9■■■□□ 2.22
ATPAF1-213ENST00000574428 USP17L1Q7RTZ2 530 aa28.9■■■□□ 2.22
ATPAF1-213ENST00000574428 DACT2Q5SW24 774 aa28.9■■■□□ 2.22
ATPAF1-213ENST00000574428 LSG1Q9H089 658 aaKnown RBP28.9■■■□□ 2.22
ATPAF1-213ENST00000574428 USP26Q9BXU7 913 aa28.89■■■□□ 2.22
ATPAF1-213ENST00000574428 ZNRF3Q9ULT6 936 aa28.89■■■□□ 2.22
ATPAF1-213ENST00000574428 PTH1RQ03431 593 aa28.88■■■□□ 2.21
ATPAF1-213ENST00000574428 MIGA1Q8NAN2 632 aa28.88■■■□□ 2.21
ATPAF1-213ENST00000574428 RAD17O75943 681 aa28.88■■■□□ 2.21
ATPAF1-213ENST00000574428 JDP2Q8WYK2 163 aa28.88■■■□□ 2.21
ATPAF1-213ENST00000574428 GPAA1O43292 621 aa28.87■■■□□ 2.21
ATPAF1-213ENST00000574428 DIXDC1Q155Q3 683 aa28.87■■■□□ 2.21
ATPAF1-213ENST00000574428 C22orf23Q9BZE7 217 aa28.87■■■□□ 2.21
ATPAF1-213ENST00000574428 PSME4Q14997 1843 aa28.87■■■□□ 2.21
ATPAF1-213ENST00000574428 F8W031 263 aaPredicted RBP28.86■■■□□ 2.21
ATPAF1-213ENST00000574428 MBD4O95243 580 aa28.86■■■□□ 2.21
ATPAF1-213ENST00000574428 VPS53Q5VIR6 699 aa28.85■■■□□ 2.21
ATPAF1-213ENST00000574428 AIDAQ96BJ3 306 aa28.85■■■□□ 2.21
ATPAF1-213ENST00000574428 TBC1D32Q96NH3 1257 aa28.85■■■□□ 2.21
ATPAF1-213ENST00000574428 FKBP1AP62942 108 aaKnown RBP28.85■■■□□ 2.21
ATPAF1-213ENST00000574428 ARMT1Q9H993 441 aa28.85■■■□□ 2.21
ATPAF1-213ENST00000574428 SUGT1Q9Y2Z0 365 aa28.85■■■□□ 2.21
ATPAF1-213ENST00000574428 IGSF3O75054 1194 aa28.84■■■□□ 2.21
ATPAF1-213ENST00000574428 GSTO1P78417 241 aa28.84■■■□□ 2.21
ATPAF1-213ENST00000574428 PSMD14O00487 310 aa28.83■■■□□ 2.21
ATPAF1-213ENST00000574428 LCORLQ8N3X6 602 aa28.83■■■□□ 2.21
ATPAF1-213ENST00000574428 TTF2Q9UNY4 1162 aaKnown RBP28.83■■■□□ 2.21
ATPAF1-213ENST00000574428 MAGEB6P1A0A0J9YX57 407 aa28.83■■■□□ 2.21
ATPAF1-213ENST00000574428 TMED8Q6PL24 325 aaPredicted RBP28.83■■■□□ 2.21
ATPAF1-213ENST00000574428 KIAA0825Q8IV33 1275 aa28.82■■■□□ 2.2
ATPAF1-213ENST00000574428 STRBPQ96SI9 672 aaKnown RBP28.82■■■□□ 2.2
ATPAF1-213ENST00000574428 LMNB1P20700 586 aa28.81■■■□□ 2.2
ATPAF1-213ENST00000574428 DYNLL1P63167 89 aaKnown RBP28.81■■■□□ 2.2
ATPAF1-213ENST00000574428 CXCL9Q07325 125 aa28.81■■■□□ 2.2
ATPAF1-213ENST00000574428 RIOK1Q9BRS2 568 aaKnown RBP28.81■■■□□ 2.2
ATPAF1-213ENST00000574428 MROH7-TTC4A0A0A0MT08 1334 aa28.81■■■□□ 2.2
ATPAF1-213ENST00000574428 MYH2Q9UKX2 1941 aa28.81■■■□□ 2.2
ATPAF1-213ENST00000574428 FOXP2O15409 715 aa28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 HSPD1P10809 573 aaKnown RBP28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 SCNN1DP51172 638 aa28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 MAP4K1Q92918 833 aa28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 AATFQ9NY61 560 aaKnown RBP eCLIP28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 VIL1P09327 827 aaKnown RBP28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 GPR162Q16538 588 aa28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 RSBN1LQ6PCB5 846 aaPredicted RBP28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 RBM8AQ9Y5S9 174 aaKnown RBP28.8■■■□□ 2.2
ATPAF1-213ENST00000574428 EPB41L2O43491 1005 aaKnown RBP28.79■■■□□ 2.2
ATPAF1-213ENST00000574428 LDHCP07864 332 aa28.79■■■□□ 2.2
ATPAF1-213ENST00000574428 RBM25P49756 843 aaKnown RBP28.79■■■□□ 2.2
ATPAF1-213ENST00000574428 ADAMTSL1Q8N6G6 1762 aa28.79■■■□□ 2.2
ATPAF1-213ENST00000574428 SLF2Q8IX21 1173 aa28.78■■■□□ 2.2
ATPAF1-213ENST00000574428 DSCC1Q9BVC3 393 aa28.78■■■□□ 2.2
ATPAF1-213ENST00000574428 UTRNP46939 3433 aa28.78■■■□□ 2.2
ATPAF1-213ENST00000574428 CIAPIN1Q6FI81 312 aa28.78■■■□□ 2.2
ATPAF1-213ENST00000574428 ZBTB12Q9Y330 459 aaPredicted RBP28.78■■■□□ 2.2
ATPAF1-213ENST00000574428 SBF1O95248 1867 aa28.77■■■□□ 2.2
ATPAF1-213ENST00000574428 PRKAB2O43741 272 aa28.77■■■□□ 2.2
ATPAF1-213ENST00000574428 GAKO14976 1311 aa28.77■■■□□ 2.2
ATPAF1-213ENST00000574428 MYO3BQ8WXR4 1341 aa28.77■■■□□ 2.2
ATPAF1-213ENST00000574428 FZD9O00144 591 aa28.76■■■□□ 2.19
ATPAF1-213ENST00000574428 MCCP23508 829 aa28.76■■■□□ 2.19
ATPAF1-213ENST00000574428 FAM163AQ96GL9 167 aaPredicted RBP28.76■■■□□ 2.19
ATPAF1-213ENST00000574428 PALD1Q9ULE6 856 aa28.76■■■□□ 2.19
ATPAF1-213ENST00000574428 DAGLAQ9Y4D2 1042 aa28.76■■■□□ 2.19
ATPAF1-213ENST00000574428 SLC4A4Q9Y6R1 1079 aa28.76■■■□□ 2.19
ATPAF1-213ENST00000574428 HSPA4P34932 840 aa28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 BTDP43251 543 aa28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 NOL10Q9BSC4 688 aaKnown RBP28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 APPP05067 770 aa28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 EIF6P56537 245 aaKnown RBP28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 TEKT1Q969V4 418 aa28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 GMLQ99445 158 aa28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 U3KPZ7 1027 aaPredicted RBP28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 DICER1Q9UPY3 1922 aaKnown RBP28.75■■■□□ 2.19
ATPAF1-213ENST00000574428 GPR75-ASB3A0A0A6YYF3 556 aa28.74■■■□□ 2.19
ATPAF1-213ENST00000574428 GNAT2P19087 354 aa28.74■■■□□ 2.19
ATPAF1-213ENST00000574428 TNIP1Q15025 636 aa28.74■■■□□ 2.19
ATPAF1-213ENST00000574428 NECTIN1Q15223 517 aa28.74■■■□□ 2.19
ATPAF1-213ENST00000574428 ZNF541Q9H0D2 1346 aa28.73■■■□□ 2.19
ATPAF1-213ENST00000574428 BAG3O95817 575 aa28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms