RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TMEM39AQ9NV64 488 aa2.85□□□□□ -1.95
CHD3-217ENST00000574022 TLR7Q9NYK1 1049 aaKnown RBP2.85□□□□□ -1.95
CHD3-217ENST00000574022 PKD2L1Q9P0L9 805 aa2.85□□□□□ -1.95
CHD3-217ENST00000574022 PFDN2Q9UHV9 154 aa2.85□□□□□ -1.95
CHD3-217ENST00000574022 GPN3Q9UHW5 284 aaPredicted RBP2.85□□□□□ -1.95
CHD3-217ENST00000574022 ZNRF3Q9ULT6 936 aa2.85□□□□□ -1.95
CHD3-217ENST00000574022 PCDHB5Q9Y5E4 795 aa2.85□□□□□ -1.95
CHD3-217ENST00000574022 METTL12A8MUP2 240 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 PDE2AO00408 941 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 DIAPH1O60610 1272 aaKnown RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 CILPO75339 1184 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 KIF4AO95239 1232 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 F11P03951 625 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 BMP2P12643 396 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 ACPPP15309 386 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 ZNF157P51786 506 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 EVA1CP58658 441 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 PLAURQ03405 335 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 FAAP100Q0VG06 881 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 SFSWAPQ12872 951 aaKnown RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 LRRC14Q15048 493 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 C21orf62-AS1Q17RA5 79 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 DALRD3Q5D0E6 543 aaKnown RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 EFHC2Q5JST6 749 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 COL13A1Q5TAT6 717 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 KANK3Q6NY19 840 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 SPATC1Q76KD6 591 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 REC114Q7Z4M0 266 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 LSRQ86X29 649 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 EXOC8Q8IYI6 725 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 TMEM102Q8N9M5 508 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 ST13P5Q8NFI4 369 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 ASAP3Q8TDY4 903 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 ZNF526Q8TF50 670 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 NXPE3Q969Y0 559 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 BHLHE41Q9C0J9 482 aaPredicted RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 GPAMQ9HCL2 828 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 GEMIN8Q9NWZ8 242 aaKnown RBP2.84□□□□□ -1.95
CHD3-217ENST00000574022 ZFATQ9P243 1243 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 GABBR1Q9UBS5 961 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 TCEAL9Q9UHQ7 104 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 ZMYM5Q9UJ78 669 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 CYP8B1Q9UNU6 501 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 PLAAQ9Y263 795 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 CD2APQ9Y5K6 639 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 PTCH2Q9Y6C5 1203 aa2.84□□□□□ -1.95
CHD3-217ENST00000574022 FIGNL2A6NMB9 653 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 NFKBIEO00221 500 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 KHNYNO15037 678 aaKnown RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 ATXN7O15265 892 aaPredicted RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 CAPN5O15484 640 aaPredicted RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 PRC1O43663 620 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 MAP3K6O95382 1288 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 SMPD1P17405 629 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 NFKB1P19838 968 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 BMP6P22004 513 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 NME2P22392 152 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 SOX18P35713 384 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 EXOSC10Q01780 885 aaKnown RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 C6orf118Q5T5N4 469 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 POTEGQ6S5H5 508 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 C6orf15Q6UXA7 325 aaPredicted RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 RUFY4Q6ZNE9 571 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 JAMLQ86YT9 394 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 FAM178BQ8IXR5 827 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 CCDC146Q8IYE0 955 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 FAM9AQ8IZU1 332 aaPredicted RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 C19orf47Q8N9M1 422 aaKnown RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 ZSWIM2Q8NEG5 633 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 MORC4Q8TE76 937 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 CHAC2Q8WUX2 184 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 HPS1Q92902 700 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 ZNF669Q96BR6 464 aaPredicted RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 HHIPQ96QV1 700 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 GAS2L1Q99501 681 aaPredicted RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 ZNF576Q9H609 170 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 EHMT1Q9H9B1 1298 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 EFCC1Q9HA90 598 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 CBX8Q9HC52 389 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 ATP8A1Q9Y2Q0 1164 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 DYRK1BQ9Y463 629 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 PCDHB14Q9Y5E9 798 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 GTF3C5Q9Y5Q8 519 aaPredicted RBP2.83□□□□□ -1.96
CHD3-217ENST00000574022 EID1Q9Y6B2 187 aa2.83□□□□□ -1.96
CHD3-217ENST00000574022 LOC102724428A0A0B4J2F2 783 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 A0A1W2PQH9 124 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 TTLL8A6PVC2 850 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 B2RBV5 119 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 ATE1O95260 518 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 FAM153BP0C7A2 387 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 FAM157BP0CG42 384 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 MYCLP1P12525 358 aaPredicted RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 HOXD8P13378 290 aaPredicted RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 ARNTP27540 789 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 CDKN1CP49918 316 aaPredicted RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 SIK1P57059 783 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 TBX4P57082 545 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 NFKB2Q00653 900 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 RPL6Q02878 288 aaKnown RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 LAMC2Q13753 1193 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms